View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2816_low_16 (Length: 424)

Name: NF2816_low_16
Description: NF2816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2816_low_16
NF2816_low_16
[»] chr3 (17 HSPs)
chr3 (1-407)||(6238174-6238583)
chr3 (62-372)||(6259727-6260043)
chr3 (64-353)||(6169466-6169761)
chr3 (64-372)||(6245862-6246179)
chr3 (224-372)||(6266414-6266562)
chr3 (202-372)||(13269750-13269917)
chr3 (193-348)||(6590532-6590687)
chr3 (199-372)||(6143020-6143190)
chr3 (198-264)||(5250874-5250940)
chr3 (235-354)||(6883274-6883390)
chr3 (204-259)||(6900818-6900873)
chr3 (28-61)||(6238140-6238173)
chr3 (64-119)||(6590755-6590810)
chr3 (64-119)||(6917679-6917734)
chr3 (198-264)||(4388195-4388261)
chr3 (202-264)||(5268765-5268827)
chr3 (240-310)||(8568163-8568233)
[»] chr1 (1 HSPs)
chr1 (67-141)||(35139802-35139876)
[»] scaffold0425 (1 HSPs)
scaffold0425 (193-261)||(13154-13222)


Alignment Details
Target: chr3 (Bit Score: 368; Significance: 0; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Original strand, 6238174 - 6238583
Alignment:
Q  1 agctgtacgtcggtgcttaacttaaaaccgcaaatattttaataattttaagaacaaattataactgtctgaaagtaaaaattcgactatttcctccttt 100  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  6238174 agctgtccgtcggtgcttaacttaaatccgcaaatattttaataattttaagaacaaattataactgtctgaaagtaaaaattcgactatttcctctttt 6238273  T
Q  101 tcacgctctctaccatatacgatagattcagccatgaatga---agtagcaaaatcgctggctccatcttcataataataagaactatgaagttgcaatc 197  Q
    |||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6238274 tcacgctctctaccatatacgatagattcagccatgaatgatgaagtagcaaaatcgctggctccatcttcataataataagaactatgaagttgcaatc 6238373  T
Q  198 tatccttttgatttgcaagaaactctagcctctcgagcaatactttaatcctagattcaaatcgattgatagaacctgaaagaaagcgttgtatctttcc 297  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6238374 tatccttttgatttgcaagaaactctaacctcttgagcaatactttaatcctagattcaaatcgattgatagaacctgaaagatagcgttgtatctttcc 6238473  T
Q  298 cttttgttgtgcagcatcagtagcaatgacatccaatacttgctctaattcttataccgcatcactgacatcatcttcacgtctagtttctcgtactact 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  6238474 cttttgttgtgcagcatcagtagcaatgacatccaatacttgctctaattcttataccgcatcactgccatcatcttcacgtctagtttctcgtactact 6238573  T
Q  398 ctgtctcttc 407  Q
    ||||||||||    
T  6238574 ctgtctcttc 6238583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 62 - 372
Target Start/End: Original strand, 6259727 - 6260043
Alignment:
Q  62 taactgtctgaaagtaaaaattcgactatttcctccttttcacgctctctaccatatacgatagattcagccatgaatgaagtagcaaaatcgctggctc 161  Q
    |||||||||||||||||||||| || ||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||    
T  6259727 taactgtctgaaagtaaaaatttgattatttcctctttttcacgttctctaccatatatgatagattcagccatgaatgaagtagcgaaaccgctggctc 6259826  T
Q  162 catcttcata---ataataag--aactat-gaagttgcaatctatccttttgatttgcaagaaactctagcctctcgagcaatactttaatcctagattc 255  Q
      ||||||||   ||||| ||  |||| | |||||| |||||||   ||||   |||||||||||||||||||||  |||||||||||||||||||||||    
T  6259827 tttcttcatataaataattagtaaactcttgaagttccaatctagatttttccattgcaagaaactctagcctcttaagcaatactttaatcctagattc 6259926  T
Q  256 aaatcgattgatagaacctgaaagaaagcgttgtatctttcccttttgttgtgcagcatcagtagcaatgacatccaatacttgctctaattcttatacc 355  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||| || ||||| ||||||    
T  6259927 aaatcgattgatagaacctgaaagaaagcgttgtatctttcccttttgttgtgcggcgtcagtagcaatgacatccaatagttgttccaattcgtatacc 6260026  T
Q  356 gcatcactgacatcatc 372  Q
     ||| ||| ||||||||    
T  6260027 tcattactcacatcatc 6260043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 64 - 353
Target Start/End: Original strand, 6169466 - 6169761
Alignment:
Q  64 actgtctgaaagtaaaaattcgactatttcctccttttcacgctctctaccatatacgatagattcagccatgaatgaagtag---caaaatcgctggct 160  Q
    ||||| |||||||||||| || | |||||| || || ||| ||||||||||||||| ||||||||||  ||||||||| | ||   |||||| |||||||    
T  6169466 actgtatgaaagtaaaaaatcaattatttcttctttctcatgctctctaccatatatgatagattcattcatgaatgatgaagttccaaaattgctggct 6169565  T
Q  161 ccatcttcataataataagaa--ct-atgaagttgcaatctatccttttgatttgcaagaaactctagcctctcgagcaatactttaatcctagattcaa 257  Q
    |||||||||| |||| || ||  || |||||||||||||||||| ||||| |||||||||| || |||||||| || |||||||||||||||||||||||    
T  6169566 ccatcttcatgataacaataatcctgatgaagttgcaatctatcattttgttttgcaagaacctttagcctcttgatcaatactttaatcctagattcaa 6169665  T
Q  258 atcgattgatagaacctgaaagaaagcgttgtatctttcccttttgttgtgcagcatcagtagcaatgacatccaatacttgctctaattcttata 353  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| | |||||||| ||| ||||    
T  6169666 atcgattgatagaacctgaaagaaagcgttgtatctttcccttttgttgtgcggcgtcagtagcaatgacatccaacagttgctctacttcgtata 6169761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 64 - 372
Target Start/End: Original strand, 6245862 - 6246179
Alignment:
Q  64 actgtctgaaagtaaaaattcgactatttcctccttttcacgctctctaccatatacgatagattcagccatgaatgaagtagc--aaaatc-gctggct 160  Q
    ||||||||||||||||||||| | |||||| || || ||| |||||||||||||||  | |||||||||||  || || | ||   |||||| |||||||    
T  6245862 actgtctgaaagtaaaaattcaattatttcttctttctcatgctctctaccatatatcacagattcagccaccaaagatgcagttgaaaatctgctggct 6245961  T
Q  161 ccatcttcataataataagaacta------tgaagttgcaatctatccttttgatttgcaagaaactctagcctctcgagcaatactttaatcctagatt 254  Q
    ||||||||||||||||||  |||       ||||||  |||| ||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  6245962 ccatcttcataataataacgacttaattcgtgaagtcccaatatattcttttgatctgcaagaaactctagcctcttgagcaatactttaatcctagatt 6246061  T
Q  255 caaatcgattgatagaacctgaaagaaagcgttgtatctttcccttttgttgtgcagcatcagtagcaatgacatccaatacttgctctaattcttatac 354  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||  ||||||| ||| |||||||| |||||    
T  6246062 caaatcgattgatagaacctgaaagaaagcgttgtatctttcccttttgttttgcagcgtcactagcaatgatgtccaatagttgatctaattcgtatac 6246161  T
Q  355 cgcatcactgacatcatc 372  Q
    | ||| |||  |||||||    
T  6246162 ctcattactcgcatcatc 6246179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 224 - 372
Target Start/End: Original strand, 6266414 - 6266562
Alignment:
Q  224 agcctctcgagcaatactttaatcctagattcaaatcgattgatagaacctgaaagaaagcgttgtatctttcccttttgttgtgcagcatcagtagcaa 323  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||  ||| ||||||    
T  6266414 agcctcttgagcaatactttaatcctagattcaaaccgattgatagaacctgaaagaaagcgttgtatctttcccttttgatttgcagagtcactagcaa 6266513  T
Q  324 tgacatccaatacttgctctaattcttataccgcatcactgacatcatc 372  Q
    |||  ||||| | ||| |||||||| |||||| ||| |||  |||||||    
T  6266514 tgatgtccaacagttgatctaattcgtatacctcattactcgcatcatc 6266562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 202 - 372
Target Start/End: Complemental strand, 13269917 - 13269750
Alignment:
Q  202 cttttgatttgcaagaaactctagcctctcgagcaatactttaatcctagattcaaatcgattgatagaacctgaaagaaagcgttgtatctttcccttt 301  Q
    |||| ||| |||||||||| |||||||||| ||| |  ||||||| ||||||||||||||||| ||| || | |||||||| ||   |||||| ||||||    
T  13269917 ctttagatctgcaagaaacactagcctctccagcgaagctttaattctagattcaaatcgattaataaaagcagaaagaaaacgacttatcttccccttt 13269818  T
Q  302 tgttgtgcagcatcagtagcaatgacatccaatacttgctctaattcttataccgcatcactgacatcatc 372  Q
     |||||   || |||||| |||| |||||||||| |||||||||||| |||||| ||| ||||||||||||    
T  13269817 cgttgt---gcgtcagtaacaatcacatccaatagttgctctaattcgtatacctcattactgacatcatc 13269750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 193 - 348
Target Start/End: Complemental strand, 6590687 - 6590532
Alignment:
Q  193 caatctatccttttgatttgcaagaaactctagcctctcgagcaatactttaatcctagattcaaa---tcgattgatagaacctgaaagaaagcgttgt 289  Q
    |||| |||||||||||| |||||||||||||||  |||  | |||| |||||||||||| ||||||   |||||| ||| ||| ||||||||||||| ||    
T  6590687 caatttatccttttgatctgcaagaaactctaggttctgtatcaatgctttaatcctagcttcaaatcctcgattaataaaacgtgaaagaaagcgtcgt 6590588  T
Q  290 atctttcccttttgttgtgcagcatcagtagcaatgacatccaatacttgctctaattc 348  Q
    ||||| |||||| |||||||  ||||   |||||| |||||||||| ||||||||||||    
T  6590587 atcttgccctttggttgtgcgtcatc---agcaatcacatccaatagttgctctaattc 6590532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 199 - 372
Target Start/End: Original strand, 6143020 - 6143190
Alignment:
Q  199 atccttttgatttgcaagaaactctagcctctcgagcaatactttaatcctagattcaaatcgattgatagaacctgaaagaaagcgttgtatctttccc 298  Q
    ||||||||||  |||| | |||||||||||||  |||| ||||||||| ||||||||||||||||| ||| || | ||||||||||||  |||||| |||    
T  6143020 atccttttgacctgcacggaactctagcctcttcagcattactttaattctagattcaaatcgattaataaaagcagaaagaaagcgtcttatcttcccc 6143119  T
Q  299 ttttgttgtgcagcatcagtagcaatgacatccaatacttgctctaattcttataccgcatcactgacatcatc 372  Q
    ||| | |||   || ||||||||||| |||||||||| |||||| | ||| |||| | ||| ||| ||||||||    
T  6143120 tttcggtgt---gcgtcagtagcaataacatccaatagttgctccacttcatataacacatgactcacatcatc 6143190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 198 - 264
Target Start/End: Original strand, 5250874 - 5250940
Alignment:
Q  198 tatccttttgatttgcaagaaactctagcctctcgagcaatactttaatcctagattcaaatcgatt 264  Q
    |||||||||| ||||||||||| |||||| |||| |||||| |||||||||||||||||||| ||||    
T  5250874 tatccttttgctttgcaagaaattctagcttctctagcaattctttaatcctagattcaaatggatt 5250940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 354
Target Start/End: Original strand, 6883274 - 6883390
Alignment:
Q  235 caatactttaatcctagattcaaatcgattgatagaacctgaaagaaagcgttgtatctttcccttttgttgtgcagcatcagtagcaatgacatccaat 334  Q
    ||||||||  |||||| ||| | || |||| ||| |||||||||||| |||||||||||| ||| ||||||||   || ||||| ||||| |||||||||    
T  6883274 caatacttccatcctatattgacattgattaataaaacctgaaagaatgcgttgtatcttgcccatttgttgt---gcgtcagtcgcaatcacatccaat 6883370  T
Q  335 acttgctctaattcttatac 354  Q
    | ||| |||||||| |||||    
T  6883371 agttgatctaattcgtatac 6883390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 204 - 259
Target Start/End: Original strand, 6900818 - 6900873
Alignment:
Q  204 tttgatttgcaagaaactctagcctctcgagcaatactttaatcctagattcaaat 259  Q
    |||||| ||||| ||||| ||||||||  |||||||||||||||||||||||||||    
T  6900818 tttgatctgcaataaactttagcctcttcagcaatactttaatcctagattcaaat 6900873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 28 - 61
Target Start/End: Original strand, 6238140 - 6238173
Alignment:
Q  28 ccgcaaatattttaataattttaagaacaaatta 61  Q
    ||||||||||||||||||||||||||||||||||    
T  6238140 ccgcaaatattttaataattttaagaacaaatta 6238173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 119
Target Start/End: Complemental strand, 6590810 - 6590755
Alignment:
Q  64 actgtctgaaagtaaaaattcgactatttcctccttttcacgctctctaccatata 119  Q
    ||||||||||||||||||||  | ||||||||| || ||| |||||||||||||||    
T  6590810 actgtctgaaagtaaaaatttaattatttcctctttctcatgctctctaccatata 6590755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 119
Target Start/End: Original strand, 6917679 - 6917734
Alignment:
Q  64 actgtctgaaagtaaaaattcgactatttcctccttttcacgctctctaccatata 119  Q
    ||||||||| ||||||||||| | ||||||||| || ||| |||||||||||||||    
T  6917679 actgtctgatagtaaaaattcaattatttcctctttctcatgctctctaccatata 6917734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 198 - 264
Target Start/End: Complemental strand, 4388261 - 4388195
Alignment:
Q  198 tatccttttgatttgcaagaaactctagcctctcgagcaatactttaatcctagattcaaatcgatt 264  Q
    |||||||||| || |||||||| |||| | |||| |||||| |||| ||||||||||||||| ||||    
T  4388261 tatccttttgcttcgcaagaaattctaacttctctagcaattctttgatcctagattcaaatggatt 4388195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 264
Target Start/End: Original strand, 5268765 - 5268827
Alignment:
Q  202 cttttgatttgcaagaaactctagcctctcgagcaatactttaatcctagattcaaatcgatt 264  Q
    |||||| ||||||||||| |||||| |||| |||||| |||| |||||||| |||||| ||||    
T  5268765 cttttgttttgcaagaaattctagcttctctagcaattctttgatcctagactcaaatggatt 5268827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 310
Target Start/End: Complemental strand, 8568233 - 8568163
Alignment:
Q  240 ctttaatcctagattcaaatcgattgatagaacctgaaagaaagcgttgtatctttcccttttgttgtgca 310  Q
    |||| ||||||||||||||||||||  || |||||||||| ||| ||||  |||||||||||  |||||||    
T  8568233 ctttgatcctagattcaaatcgattagtaaaacctgaaaggaagtgttgcgtctttccctttctttgtgca 8568163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 67 - 141
Target Start/End: Complemental strand, 35139876 - 35139802
Alignment:
Q  67 gtctgaaagtaaaaattcgactatttcctccttttcacgctctctaccatatacgatagattcagccatgaatga 141  Q
    |||||||| |||||||| || ||||||||| |||||||| ||||||||||||| |||||||||||||||||||||    
T  35139876 gtctgaaaataaaaatttgattatttcctctttttcacgttctctaccatatatgatagattcagccatgaatga 35139802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 261
Target Start/End: Complemental strand, 13222 - 13154
Alignment:
Q  193 caatctatccttttgatttgcaagaaactctagcctctcgagcaatactttaatcctagattcaaatcg 261  Q
    |||| |||||||||||| |||||| ||||||| ||||   |||||||||||| |||||||||| |||||    
T  13222 caatatatccttttgatctgcaaggaactctaacctcctcagcaatactttactcctagattccaatcg 13154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University