View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2816_low_17 (Length: 422)
Name: NF2816_low_17
Description: NF2816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2816_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 221 - 408
Target Start/End: Original strand, 1857890 - 1858077
Alignment:
| Q |
221 |
atgcacattgcattgagnnnnnnnttattgggagaaattagaataatctttgggagtttgtaaaatcttattgaagtatttcgtgtagttaggaattagg |
320 |
Q |
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| T |
1857890 |
atgcacattgcattgagaaaaaaattaatgggagaaattagaataatctttgggagtttgtaaaatcttattgaagtatttcgtgtagttaggaattagg |
1857989 |
T |
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| Q |
321 |
tcgatagcacgaagaaggtggcaaatgaatatgtaaatnnnnnnntgatttgattcatatatattagagatttaaagaaacatgtgat |
408 |
Q |
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| T |
1857990 |
tcgatagcacgaagaaggtggcaaatgaatatgtaaataaaaaaatgatttgattcatatatattagagatttaaagaaacatgtgat |
1858077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 11 - 142
Target Start/End: Original strand, 1857681 - 1857812
Alignment:
| Q |
11 |
cagagaagatggtaatttttacggttatggtggtttttcggcgagatatgcagcggttccggtgacggagaaatcgtcgatggatttaaagaaagaagcg |
110 |
Q |
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| T |
1857681 |
cagagaagatggtaatttttacggttatggtggtttttcggcgagatatgcagcggttccggtgacggagaaatcgtcgatggatttaaagaaagaagcg |
1857780 |
T |
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| Q |
111 |
ccggtgatcacgtgagtttcacggagatatgc |
142 |
Q |
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| T |
1857781 |
ccggtgatcacgtgagtttcacggagatatgc |
1857812 |
T |
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