View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2816_low_18 (Length: 418)
Name: NF2816_low_18
Description: NF2816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2816_low_18 |
 | |
|
| [»] scaffold0161 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 370; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 18 - 403
Target Start/End: Complemental strand, 32465090 - 32464705
Alignment:
| Q |
18 |
ccacactactcatattctctccaccacttattatcacatcttttgtcctatccttaatctccatatacccattcttatgtataaccccaacatcacccgt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32465090 |
ccacactactcatattctctccaccacttattatcacatcttttgtcctatccttaatctccatatacccattcttatgtataaccccaacatcacccgt |
32464991 |
T |
|
| Q |
118 |
gtaacaccaaccatcctttctcatacactgccacgtggcatattcatcttttaaataaccaagcataacacaagcaccttttacaacgatttcaccaacc |
217 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32464990 |
gtaaaaccaaccatcctttctcatacactgccacgtggcatattcatcttttaaataaccaagcataacacaagcaccttttacaacgatttcaccaacc |
32464891 |
T |
|
| Q |
218 |
gttacaccatcattctttacactttcaccagtgggtccgaccacatcaacctccgccacccccattctcctcacaccttgccttgccttcatcctcgccc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
32464890 |
gttacaccatcattctttacactttcaccagtgggtccgaccacatcaacctccgccacccccaccctcctcacaccttgccttgccttcatcctcgccc |
32464791 |
T |
|
| Q |
318 |
tctccgtcgccggaaacctatcccattctctcttccaagcacacgacactatcactccacaagtctccgtcattccatatccatga |
403 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
32464790 |
tctccgtcgccggaaacctatcccattctctcttccaagcacacgacactatcactccacatgtctccgtcattccatatccatga |
32464705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 403
Target Start/End: Original strand, 32456045 - 32456430
Alignment:
| Q |
18 |
ccacactactcatattctctccaccacttattatcacatcttttgtcctatccttaatctccatatacccattcttatgtataaccccaacatcacccgt |
117 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |||||||| |||||| |||||||||| |||||||| || ||| |||||| ||||||||||||| |
|
|
| T |
32456045 |
ccacactactcatattctctccgccacttattatcaaatcttttgacctatctttaatctccaaatacccatcctcatgcataaccgcaacatcacccgt |
32456144 |
T |
|
| Q |
118 |
gtaacaccaaccatcctttctcatacactgccacgtggcatattcatcttttaaataaccaagcataacacaagcaccttttacaacgatttcaccaacc |
217 |
Q |
| |
|
||| ||||||||| |||| | ||||||||| | |||||| |||||||| |||||||| | ||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
32456145 |
ataaaaccaaccattctttttgatacactgcgatgtggcaatctcatctttaaaataacctaacataacacatgcaccttttacaacgatctcaccaacg |
32456244 |
T |
|
| Q |
218 |
gttacaccatcattctttacactttcaccagtgggtccgaccacatcaacctccgccacccccattctcctcacaccttgccttgccttcatcctcgccc |
317 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
32456245 |
gttacaccatcattcttcacactttcaccagtgggtcccaccacatcaacctccgccacccccaccttcctcacaccttgcctcgccttcatcctcgcct |
32456344 |
T |
|
| Q |
318 |
tctccgtcgccggaaacctatcccattctctcttccaagcacacgacactatcactccacaagtctccgtcattccatatccatga |
403 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||| |||||||| |
|
|
| T |
32456345 |
tctccgttgccggaaacctatcccattctctcttccaagcacacgacacaatcaccccaatcacctccgtcattccaaatccatga |
32456430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 129
Target Start/End: Original strand, 32471781 - 32471892
Alignment:
| Q |
18 |
ccacactactcatattctctccaccacttattatcacatcttttgtcctatccttaatctccatatacccattcttatgtataaccccaacatcacccgt |
117 |
Q |
| |
|
|||||||||||| |||||| |||||||| || ||||||||||||| |||||| || ||||| | |||||||| | ||| || || || |||||||| || |
|
|
| T |
32471781 |
ccacactactcaaattctcaccaccactaataatcacatcttttgacctatcttttatctctaaatacccatcttcatgcatcacacctacatcaccagt |
32471880 |
T |
|
| Q |
118 |
gtaacaccaacc |
129 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
32471881 |
gtaaaaccaacc |
32471892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0161 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: scaffold0161
Description:
Target: scaffold0161; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 403
Target Start/End: Complemental strand, 24520 - 24135
Alignment:
| Q |
18 |
ccacactactcatattctctccaccacttattatcacatcttttgtcctatccttaatctccatatacccattcttatgtataaccccaacatcacccgt |
117 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||| || ||| |||||| |||||||||| || |
|
|
| T |
24520 |
ccacactactcatattctccccaccacttattatcacatcttttaacctatccttaatctccaaatacccatcctcatgcataaccgcaacatcacctgt |
24421 |
T |
|
| Q |
118 |
gtaacaccaaccatcctttctcatacactgccacgtggcatattcatcttttaaataaccaagcataacacaagcaccttttacaacgatttcaccaacc |
217 |
Q |
| |
|
||| ||||||||| |||| ||||||||||| ||||||||| ||||||||||| ||||| | |||||||||||||||||||||||| || |||||| || |
|
|
| T |
24420 |
ataaaaccaaccattctttttcatacactgcaacgtggcattctcatcttttaagtaacctaacataacacaagcaccttttacaactatctcaccagcc |
24321 |
T |
|
| Q |
218 |
gttacaccatcattctttacactttcaccagtgggtccgaccacatcaacctccgccacccccattctcctcacaccttgccttgccttcatcctcgccc |
317 |
Q |
| |
|
|||| |||||| | ||| |||||||| || |||||||| |||||||||||||||| ||| |||| || |||||||||||||| ||||||||||||||| |
|
|
| T |
24320 |
gttataccatcgtgcttcacactttctccggtgggtcccaccacatcaacctccgtcacacccacccttctcacaccttgcctcgccttcatcctcgcct |
24221 |
T |
|
| Q |
318 |
tctccgtcgccggaaacctatcccattctctcttccaagcacacgacactatcactccacaagtctccgtcattccatatccatga |
403 |
Q |
| |
|
|| ||||||||||||||||||||||||| || ||||||||||| || || ||||| ||| ||||||||||||||| |||||| |
|
|
| T |
24220 |
tccccgtcgccggaaacctatcccattcccttttccaagcacatgaaacaatcacaccaatcacctccgtcattccataaccatga |
24135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 114
Target Start/End: Original strand, 29003813 - 29003877
Alignment:
| Q |
50 |
atcacatcttttgtcctatccttaatctccatatacccattcttatgtataaccccaacatcacc |
114 |
Q |
| |
|
||||||||||| | |||||| ||||| |||| ||| |||| ||||||||||| ||||||||||| |
|
|
| T |
29003813 |
atcacatctttagacctatctttaatttccaaataaccatctttatgtataacaccaacatcacc |
29003877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University