View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2816_low_19 (Length: 414)

Name: NF2816_low_19
Description: NF2816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2816_low_19
NF2816_low_19
[»] scaffold0067 (1 HSPs)
scaffold0067 (28-185)||(7954-8111)
[»] chr7 (3 HSPs)
chr7 (28-185)||(41455364-41455521)
chr7 (28-176)||(41451689-41451838)
chr7 (33-176)||(32355226-32355369)
[»] chr8 (3 HSPs)
chr8 (28-176)||(38640645-38640793)
chr8 (45-185)||(43658908-43659048)
chr8 (89-176)||(43654318-43654405)
[»] chr4 (6 HSPs)
chr4 (28-185)||(6799108-6799265)
chr4 (28-175)||(8986604-8986753)
chr4 (31-185)||(8996067-8996223)
chr4 (56-176)||(42528324-42528436)
chr4 (28-176)||(55480736-55480887)
chr4 (102-157)||(6806927-6806981)
[»] chr3 (5 HSPs)
chr3 (37-185)||(28703665-28703813)
chr3 (28-101)||(32893791-32893864)
chr3 (112-185)||(32893715-32893788)
chr3 (28-174)||(36611959-36612106)
chr3 (51-129)||(8878851-8878929)
[»] chr2 (7 HSPs)
chr2 (28-167)||(8363283-8363422)
chr2 (253-328)||(673109-673184)
chr2 (336-403)||(672825-672892)
chr2 (28-105)||(33357978-33358055)
chr2 (28-176)||(27529068-27529216)
chr2 (97-176)||(8365589-8365668)
chr2 (51-163)||(40862774-40862886)
[»] chr1 (3 HSPs)
chr1 (42-176)||(13016351-13016485)
chr1 (42-176)||(47323264-47323395)
chr1 (72-176)||(47326868-47326972)
[»] chr5 (3 HSPs)
chr5 (33-176)||(40254848-40254988)
chr5 (28-176)||(26049990-26050139)
chr5 (28-176)||(26053404-26053553)
[»] chr6 (2 HSPs)
chr6 (28-176)||(27074957-27075106)
chr6 (55-176)||(27078346-27078469)
[»] scaffold0012 (1 HSPs)
scaffold0012 (56-129)||(206191-206264)


Alignment Details
Target: scaffold0067 (Bit Score: 130; Significance: 3e-67; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 28 - 185
Target Start/End: Original strand, 7954 - 8111
Alignment:
Q  28 ctcggtatgattatcgccgagatgaacctgttgtactctgggggagttgtgcaattctgcagataattccttagttcagtgacttagtcacgcctcaggt 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||| ||||||| ||||||||    
T  7954 ctcggtatgattatcgccgagatgaacctgttgtactctgggggagttgcgcaattttgcggataattccttagttcagtgacatagtcacacctcaggt 8053  T
Q  128 tttactttttattttcttgttttgcaggttatgatccttccgtcatccgtagacaaca 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  8054 tttactttttattttcttgttttgcaggttatgatccttccgtcatccgcagtcaaca 8111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 110; Significance: 3e-55; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 28 - 185
Target Start/End: Complemental strand, 41455521 - 41455364
Alignment:
Q  28 ctcggtatgattatcgccgagatgaacctgttgtactctgggggagttgtgcaattctgcagataattccttagttcagtgacttagtcacgcctcaggt 127  Q
    ||||| ||||||| | ||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||| |    
T  41455521 ctcggaatgattacctccgagatgaacctgttgtactttgggggagttgcgcaattctgcggataattccttagttcagtgacatagtcacgcctcagat 41455422  T
Q  128 tttactttttattttcttgttttgcaggttatgatccttccgtcatccgtagacaaca 185  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||| || |||||    
T  41455421 tttactttttattttcttgttttgtaggttatgatccttcagtcatccgcagtcaaca 41455364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 28 - 176
Target Start/End: Complemental strand, 41451838 - 41451689
Alignment:
Q  28 ctcggtatgattatcgccgagatgaacctgttgtactctggggg-agttgtgcaattctgcagataattccttagttcagtgacttagtcacgcctcagg 126  Q
    ||||| ||||||| || ||||||||||||||||||||||||||| |||||  ||||||||| ||||||||||||||| |||||| ||||||||||||| |    
T  41451838 ctcggaatgattaccgtcgagatgaacctgttgtactctggggggagttgcacaattctgcggataattccttagtttagtgacatagtcacgcctcatg 41451739  T
Q  127 ttttactttttattttcttgttttgcaggttatgatccttccgtcatccg 176  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  41451738 ttttactttttattttcttgttttgcaggttatgatccttcagtcatccg 41451689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 33 - 176
Target Start/End: Original strand, 32355226 - 32355369
Alignment:
Q  33 tatgattatcgccgagatgaacctgttgtactctgggggagttgtgcaattctgcagataattccttagttcagtgacttagtcacgcctcaggttttac 132  Q
    ||||||||||| |||||||||||||||||||||||| | ||||| | ||||||||  |||||| |||||||||||||  | |||||||||||||||||||    
T  32355226 tatgattatcgtcgagatgaacctgttgtactctggagaagttgcgtaattctgcgaataatttcttagttcagtgatattgtcacgcctcaggttttac 32355325  T
Q  133 tttttattttcttgttttgcaggttatgatccttccgtcatccg 176  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  32355326 tttttattttcttgttttgcaggttatgatccttcagtcatccg 32355369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 105; Significance: 3e-52; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 28 - 176
Target Start/End: Complemental strand, 38640793 - 38640645
Alignment:
Q  28 ctcggtatgattatcgccgagatgaacctgttgtactctgggggagttgtgcaattctgcagataattccttagttcagtgacttagtcacgcctcaggt 127  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  38640793 ctcgatatgattatcgacgagatgaacctgttgtactctgggggagttgcacaattctgcggataattccttagttcagtgacatagtcacgcctcaggt 38640694  T
Q  128 tttactttttattttcttgttttgcaggttatgatccttccgtcatccg 176  Q
    ||||| ||||||||| || ||||||||||| ||||||||| ||||||||    
T  38640693 tttacgttttattttattattttgcaggttgtgatccttcagtcatccg 38640645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 45 - 185
Target Start/End: Original strand, 43658908 - 43659048
Alignment:
Q  45 cgagatgaacctgttgtactctgggggagttgtgcaattctgcagataattccttagttcagtgacttagtcacgcctcaggttttactttttattttct 144  Q
    ||||| ||||| |||||||||||||||||||| |||||||||| ||||||||||||||| |||||| | |||| ||||||| |||||| ||| |||||||    
T  43658908 cgagaagaaccggttgtactctgggggagttgcgcaattctgcggataattccttagtttagtgacattgtcatgcctcagattttacgtttcattttct 43659007  T
Q  145 tgttttgcaggttatgatccttccgtcatccgtagacaaca 185  Q
    ||||||||||||| ||||||||| || ||||| | ||||||    
T  43659008 tgttttgcaggttgtgatccttcagttatccgcaaacaaca 43659048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 89 - 176
Target Start/End: Original strand, 43654318 - 43654405
Alignment:
Q  89 gataattccttagttcagtgacttagtcacgcctcaggttttactttttattttcttgttttgcaggttatgatccttccgtcatccg 176  Q
    |||||||||||||||||||||| | ||||||||||| ||||||  ||| |||||||||||||||||||| ||||||||| ||||||||    
T  43654318 gataattccttagttcagtgacattgtcacgcctcatgttttatgtttcattttcttgttttgcaggttgtgatccttcagtcatccg 43654405  T

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Target: chr4 (Bit Score: 94; Significance: 9e-46; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 28 - 185
Target Start/End: Original strand, 6799108 - 6799265
Alignment:
Q  28 ctcggtatgattatcgccgagatgaacctgttgtactctgggggagttgtgcaattctgcagataattccttagttcagtgacttagtcacgcctcaggt 127  Q
    ||||||| ||||| ||| |||| |||||||| ||||| ||||||||| | |||||||||| |||||||||||||||||||||| |||||||||| |||||    
T  6799108 ctcggtacgattaccgctgagaagaacctgtagtactttgggggagtcgcgcaattctgcggataattccttagttcagtgacatagtcacgccacaggt 6799207  T
Q  128 tttactttttattttcttgttttgcaggttatgatccttccgtcatccgtagacaaca 185  Q
    |||||||||||||||||| ||||||||||| ||||||||| |||||||| | ||||||    
T  6799208 tttactttttattttcttattttgcaggttgtgatccttcagtcatccgcaaacaaca 6799265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 28 - 175
Target Start/End: Complemental strand, 8986753 - 8986604
Alignment:
Q  28 ctcggtatgattatcgccgagatgaacctgttgtactctgggggagttgtgcaattctgcagataattccttagttcagtg--acttagtcacgcctcag 125  Q
    ||||||||||||| ||||| ||||||||| |||||  |||||||||||| |||||||| | |||||||||||||| |||||  || ||||||||||||||    
T  8986753 ctcggtatgattaccgccgggatgaaccttttgtatgctgggggagttgcgcaattctacggataattccttagtccagtgacacgtagtcacgcctcag 8986654  T
Q  126 gttttactttttattttcttgttttgcaggttatgatccttccgtcatcc 175  Q
     |||||| ||||||||  |||||||||||| | ||||||||| |||||||    
T  8986653 attttacgttttatttcattgttttgcagggtgtgatccttcggtcatcc 8986604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 31 - 185
Target Start/End: Complemental strand, 8996223 - 8996067
Alignment:
Q  31 ggtatgattatcgccgagatgaacctgttgtactctgggggagttgtgcaattctgcagataattccttagttcagtg--acttagtcacgcctcaggtt 128  Q
    |||| ||||| ||||| ||||||||||||||| | |||||||||||||||||||||| |||||||||||||| |||||  || || |||| ||| || ||    
T  8996223 ggtacgattaccgccgggatgaacctgttgtattttgggggagttgtgcaattctgcggataattccttagtccagtgacacgtaatcacaccttagatt 8996124  T
Q  129 ttactttttattttcttgttttgcaggttatgatccttccgtcatccgtagacaaca 185  Q
    |||| ||||||||  |||||||||||| | ||||||||| |||||||| | ||||||    
T  8996123 ttacgttttatttcattgttttgcaggatgtgatccttcagtcatccgcatacaaca 8996067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 56 - 176
Target Start/End: Complemental strand, 42528436 - 42528324
Alignment:
Q  56 tgttgtactctgggggagttgtgcaattctgcagataattccttagttcagtgacttagtcacgcctcaggttttactttttattttcttgttttgcagg 155  Q
    ||||||| | ||||||||||| |||||||||||||||||||||||        || ||||||||||||| ||||||| ||| ||||||||||||||||||    
T  42528436 tgttgtattttgggggagttgcgcaattctgcagataattcctta--------acatagtcacgcctcaagttttacgtttcattttcttgttttgcagg 42528345  T
Q  156 ttatgatccttccgtcatccg 176  Q
    || ||||||||| ||||||||    
T  42528344 ttgtgatccttcagtcatccg 42528324  T

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Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 28 - 176
Target Start/End: Complemental strand, 55480887 - 55480736
Alignment:
Q  28 ctcggtatgattatcgccgagatgaacctgttgtactctgggggagttgtgcaattctgcagataattccttagttcagtgacttagtcacgcctcag-- 125  Q
    ||||||||||||| | |||||| ||| | |||||| | ||||||| |||||||||| ||  ||||||| |||||| || ||| | ||||||| |||||      
T  55480887 ctcggtatgattaccaccgagaagaatcggttgtattatgggggaattgtgcaattttgtggataatttcttagtccaatgagtaagtcacgtctcagca 55480788  T
Q  126 -gttttactttttattttcttgttttgcaggttatgatccttccgtcatccg 176  Q
     |||||||||  |||||| ||||||||||||||||  |||||| ||||||||    
T  55480787 ggttttacttcatattttattgttttgcaggttattgtccttcggtcatccg 55480736  T

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Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 102 - 157
Target Start/End: Original strand, 6806927 - 6806981
Alignment:
Q  102 ttcagtgacttagtcacgcctcaggttttactttttattttcttgttttgcaggtt 157  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||    
T  6806927 ttcagtgacatagtcacgcctcaggttttac-ttttattttcttgttttgtaggtt 6806981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 4e-45; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 37 - 185
Target Start/End: Complemental strand, 28703813 - 28703665
Alignment:
Q  37 attatcgccgagatgaacctgttgtactctgggggagttgtgcaattctgcagataattccttagttcagtgacttagtcacgcctcaggttttactttt 136  Q
    |||| ||||||||||||| ||||||||| ||||||||||| |||||||||| |||||||||||||||||||||| || ||| ||||||  ||||||||||    
T  28703813 attaccgccgagatgaacttgttgtactttgggggagttgcgcaattctgcggataattccttagttcagtgacataatcatgcctcaaattttactttt 28703714  T
Q  137 tattttcttgttttgcaggttatgatccttccgtcatccgtagacaaca 185  Q
    |||||||||||||||||||||||||||||||  ||||||| || |||||    
T  28703713 tattttcttgttttgcaggttatgatccttcactcatccgcagtcaaca 28703665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 28 - 101
Target Start/End: Complemental strand, 32893864 - 32893791
Alignment:
Q  28 ctcggtatgattatcgccgagatgaacctgttgtactctgggggagttgtgcaattctgcagataattccttag 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||    
T  32893864 ctcggtatgattatcgccgagatgaacctgttgtactctgggggagttgcgcaattctgcggataatttcttag 32893791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 112 - 185
Target Start/End: Original strand, 32893715 - 32893788
Alignment:
Q  112 tagtcacgcctcaggttttactttttattttcttgttttgcaggttatgatccttccgtcatccgtagacaaca 185  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| | ||||||    
T  32893715 tagtcacgcctcaggttttacttgttattttcttgttttgcaggttatgatccttcagtcatccgcaaacaaca 32893788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 28 - 174
Target Start/End: Complemental strand, 36612106 - 36611959
Alignment:
Q  28 ctcggtatgattatcgccgagatgaacctgttgtactctgggggagttgtgcaattctgcagataattccttagttcagtgact-tagtcacgcctcagg 126  Q
    ||||||| ||||| | |||||| |||  | ||||| | ||||||||||| |||||||||   |||||| |||||| |||||||  ||||||||||| ||     
T  36612106 ctcggtacgattaccaccgagaagaatttcttgtattatgggggagttgcgcaattctgtgaataatttcttagtccagtgacggtagtcacgccttaga 36612007  T
Q  127 ttttactttttattttcttgttttgcaggttatgatccttccgtcatc 174  Q
    |||||| ||| ||||| |||||||||||||| ||||||||| ||||||    
T  36612006 ttttacgtttcattttattgttttgcaggttgtgatccttcagtcatc 36611959  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 51 - 129
Target Start/End: Complemental strand, 8878929 - 8878851
Alignment:
Q  51 gaacctgttgtactctgggggagttgtgcaattctgcagataattccttagttcagtgacttagtcacgcctcaggttt 129  Q
    |||||||||||| ||||||||| ||| |||||  ||| |||||||  ||||||||||||| ||||||||||||||||||    
T  8878929 gaacctgttgtattctgggggaattgcgcaatcttgctgataattgtttagttcagtgacgtagtcacgcctcaggttt 8878851  T

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Target: chr2 (Bit Score: 88; Significance: 4e-42; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 28 - 167
Target Start/End: Original strand, 8363283 - 8363422
Alignment:
Q  28 ctcggtatgattatcgccgagatgaacctgttgtactctgggggagttgtgcaattctgcagataattccttagttcagtgacttagtcacgcctcaggt 127  Q
    ||||||| ||||| | | ||||||| ||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||| ||||||||| ||||||    
T  8363283 ctcggtacgattacctctgagatgaccctgttgtactctggaggagttgcgcaattctgcggataattccttagttcagtgacatagtcacgcatcaggt 8363382  T
Q  128 tttactttttattttcttgttttgcaggttatgatccttc 167  Q
    ||||| ||| |||||||||||||||||||| |||||||||    
T  8363383 tttacctttcattttcttgttttgcaggttgtgatccttc 8363422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 253 - 328
Target Start/End: Complemental strand, 673184 - 673109
Alignment:
Q  253 ctttttgtggacacaaaattagcattgaagtttcatgtgtcacattttaccatattttcttaaaatgagttcattt 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  673184 ctttttgtggacacaaaattagcattgaagtttcatgtgtcacattttaccatattttcttaaaatgagttcattt 673109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 336 - 403
Target Start/End: Complemental strand, 672892 - 672825
Alignment:
Q  336 ttgcagcttctgataactgcttcaatgatggctctattgcacttcctacctagttttttgactcctat 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  672892 ttgcagcttctgataactgcttcaatgatggctctattgcacttcctacctagttttttgactcctat 672825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 28 - 105
Target Start/End: Original strand, 33357978 - 33358055
Alignment:
Q  28 ctcggtatgattatcgccgagatgaacctgttgtactctgggggagttgtgcaattctgcagataattccttagttca 105  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| | |||||||||||||||||    
T  33357978 ctcggtatgattatcgccgagatgaacctgttgtactctggaggagttgcgcaattctacggataattccttagttca 33358055  T

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Target: chr2; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 28 - 176
Target Start/End: Original strand, 27529068 - 27529216
Alignment:
Q  28 ctcggtatgattatcgccgagatgaacctgttgtactctgggggagttgtgcaattctgcagataattccttagttcagtgacttagtcacgcctcaggt 127  Q
    |||||||||| || ||||||||||||||| ||||| | |||| ||||||||||||| ||| ||||||||||||||  |||||| |||||||||||||  |    
T  27529068 ctcggtatgaataccgccgagatgaacctattgtattatgggtgagttgtgcaattatgcggataattccttagtctagtgacgtagtcacgcctcattt 27529167  T
Q  128 tttactttttattttcttgttttgcaggttatgatccttccgtcatccg 176  Q
    || | |||  ||||| |||||||| || || ||||| ||| ||||||||    
T  27529168 ttcagtttacattttattgttttgtagtttgtgatcattcggtcatccg 27529216  T

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Target: chr2; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 97 - 176
Target Start/End: Original strand, 8365589 - 8365668
Alignment:
Q  97 cttagttcagtgacttagtcacgcctcaggttttactttttattttcttgttttgcaggttatgatccttccgtcatccg 176  Q
    |||||||||||||| |||||||||||||||||||| |||| || |||||||||| |||||| ||||||||| ||||||||    
T  8365589 cttagttcagtgacatagtcacgcctcaggttttatttttcatgttcttgtttttcaggttgtgatccttcagtcatccg 8365668  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 163
Target Start/End: Complemental strand, 40862886 - 40862774
Alignment:
Q  51 gaacctgttgtactctgggggagttgtgcaattctgcagataattccttagttcagtgacttagtcacgcctcaggttttactttttattttcttgtttt 150  Q
    |||||||||||| | ||| ||| ||||| |||  ||| ||||||| ||||||||||||| |  ||||| |||||  |||||||||  ||||| |||||||    
T  40862886 gaacctgttgtattttggaggaattgtgtaatcatgcggataattacttagttcagtgattacgtcacacctcatattttactttacattttattgtttt 40862787  T
Q  151 gcaggttatgatc 163  Q
      ||||| |||||    
T  40862786 ataggttgtgatc 40862774  T

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Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 42 - 176
Target Start/End: Complemental strand, 13016485 - 13016351
Alignment:
Q  42 cgccgagatgaacctgttgtactctgggggagttgtgcaattctgcagataattccttagttcagtgacttagtcacgcctcaggttttactttttattt 141  Q
    |||||||| |||||||||||||| ||||| ||||  ||||||||||||||||||||||||||||||||| | |||||||||||| |||||| ||||||||    
T  13016485 cgccgagaagaacctgttgtactatggggaagttacgcaattctgcagataattccttagttcagtgacattgtcacgcctcagattttacgttttattt 13016386  T
Q  142 tcttgttttgcaggttatgatccttccgtcatccg 176  Q
    |||  ||||||||||||||||||||  ||||||||    
T  13016385 tctgtttttgcaggttatgatcctttagtcatccg 13016351  T

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Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 42 - 176
Target Start/End: Original strand, 47323264 - 47323395
Alignment:
Q  42 cgccgagatgaacctgttgtactctgggggagttgtgcaattctgcagataattccttagttcagtgacttagtcacgcctcaggttttactttttattt 141  Q
    |||||||| |||| ||||||||||| ||||| ||| |||||| ||| |||||||||||||||| ||||| |||||||||   ||||||||||||||||||    
T  47323264 cgccgagaagaacatgttgtactcttggggaattgcgcaattttgcggataattccttagttcggtgacatagtcacgc---aggttttactttttattt 47323360  T
Q  142 tcttgttttgcaggttatgatccttccgtcatccg 176  Q
    |||||||||||||||| ||||||||| ||||||||    
T  47323361 tcttgttttgcaggttgtgatccttcagtcatccg 47323395  T

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Target: chr1; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 72 - 176
Target Start/End: Original strand, 47326868 - 47326972
Alignment:
Q  72 agttgtgcaattctgcagataattccttagttcagtgacttagtcacgcctcaggttttactttttattttcttgttttgcaggttatgatccttccgtc 171  Q
    ||||| |||||||||| |||| ||||||||||| ||||| |||||||||||||  ||||||| |||| |||||||||||||||||| ||||||||| |||    
T  47326868 agttgcgcaattctgcggatatttccttagttctgtgacatagtcacgcctcaaattttactctttactttcttgttttgcaggttgtgatccttctgtc 47326967  T
Q  172 atccg 176  Q
    |||||    
T  47326968 atccg 47326972  T

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Target: chr5 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 33 - 176
Target Start/End: Original strand, 40254848 - 40254988
Alignment:
Q  33 tatgattatcgccgagatgaacctgttgtactctgggggagttgtgcaattctgcagataattccttagttcagtgacttagtcacgcctcaggttttac 132  Q
    |||||||||||||||||||||||||||||||| ||| ||||||| |||||||||  |||||||||||||||||||||| |||||||||||   |||||||    
T  40254848 tatgattatcgccgagatgaacctgttgtactatggaggagttgcgcaattctgtggataattccttagttcagtgacatagtcacgcct---gttttac 40254944  T
Q  133 tttttattttcttgttttgcaggttatgatccttccgtcatccg 176  Q
     ||||||||| || |||| |||||| ||||||||| ||||||||    
T  40254945 gttttattttattattttacaggttgtgatccttcagtcatccg 40254988  T

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Target: chr5; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 28 - 176
Target Start/End: Original strand, 26049990 - 26050139
Alignment:
Q  28 ctcggtatgattatcgccgagatgaacctgttgtactctgggggagttgtgcaattctgcagataattccttagttcagtgacttagtcacgcctca-gg 126  Q
    ||||||| | ||| |||||||| || ||||||||| ||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||| ||    
T  26049990 ctcggtacgcttaccgccgagaaga-cctgttgtattctgggggagttgcgcaattctgcggataattccttagtccagtgacttagtcacgcctcaggg 26050088  T
Q  127 tttta-ctttttattttcttgttttgcaggttatgatccttccgtcatccg 176  Q
    ||||| ||||||| |||  ||||||||||||| |||| |||| ||||||||    
T  26050089 ttttacctttttagtttactgttttgcaggttgtgatacttcagtcatccg 26050139  T

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Target: chr5; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 28 - 176
Target Start/End: Original strand, 26053404 - 26053553
Alignment:
Q  28 ctcggtatgattatcgccgagatgaacctgttgtactctgggggagttgtgcaattctgcagataattccttagttcagtgacttagtcacgcctca-gg 126  Q
    ||||||| | ||| |||||||| || ||||||||| ||||||||||||| |||||||| | |||||||||||||| ||||||||||||||||||||| ||    
T  26053404 ctcggtacgcttaccgccgagaaga-cctgttgtattctgggggagttgcgcaattctacggataattccttagtccagtgacttagtcacgcctcaggg 26053502  T
Q  127 tttta-ctttttattttcttgttttgcaggttatgatccttccgtcatccg 176  Q
    ||||| ||||||| |||  ||||||||||||| |||| |||| ||||||||    
T  26053503 ttttacctttttagtttactgttttgcaggttgtgatacttcagtcatccg 26053553  T

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Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 28 - 176
Target Start/End: Original strand, 27074957 - 27075106
Alignment:
Q  28 ctcggtatgattatcgccgagatgaacctgttgtactctgggggagttgtgcaattctgcagataattccttagttcagtgacttagtcacgcctca-gg 126  Q
    ||||||| | ||| |||||||| || ||||||||| ||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||| ||    
T  27074957 ctcggtacgcttaccgccgagaaga-cctgttgtattctgggggagttgcgcaattctgcggataattccttagtccagtgacttagtcacgcctcaggg 27075055  T
Q  127 tttta-ctttttattttcttgttttgcaggttatgatccttccgtcatccg 176  Q
    ||||| ||||||| ||| |||||||||||||| |||| |||| ||||||||    
T  27075056 ttttacctttttagtttattgttttgcaggttgtgatacttcagtcatccg 27075106  T

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Target: chr6; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 55 - 176
Target Start/End: Original strand, 27078346 - 27078469
Alignment:
Q  55 ctgttgtactctgggggagttgtgcaattctgcagataattccttagttcagtgacttagtcacgcctca-ggtttta-ctttttattttcttgttttgc 152  Q
    |||||||| ||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||| ||||||| ||||||| |||  ||||||||    
T  27078346 ctgttgtattctgggggagttgcgcaattctgcggataattccttagtccagtgacttagtcacgcctcagggttttacctttttagtttactgttttgc 27078445  T
Q  153 aggttatgatccttccgtcatccg 176  Q
    ||||| |||| |||| ||||||||    
T  27078446 aggttgtgatacttcagtcatccg 27078469  T

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Target: scaffold0012 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 56 - 129
Target Start/End: Original strand, 206191 - 206264
Alignment:
Q  56 tgttgtactctgggggagttgtgcaattctgcagataattccttagttcagtgacttagtcacgcctcaggttt 129  Q
    ||||||| ||||||||||||| || ||| ||  |||||||||||||| || |||| ||||||||||||| ||||    
T  206191 tgttgtattctgggggagttgcgctattatgtggataattccttagtccaatgacctagtcacgcctcaagttt 206264  T

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