View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2816_low_2 (Length: 820)
Name: NF2816_low_2
Description: NF2816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2816_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 397 - 801
Target Start/End: Original strand, 5034374 - 5034779
Alignment:
| Q |
397 |
aaatctatattttttgcctaatttatatggctcaattatattacaggaccaccaccaacttaaaatgttctcaacaatctgaccactgctttctattgat |
496 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
5034374 |
aaatctacattttttgcctaatttatatggctcaattatattacaggaccaccaccaacttaaaatgttctcaacaatgtgaccactgctttctattgat |
5034473 |
T |
|
| Q |
497 |
tgaatatagcagcagcagcattagaaggaaaaagaagatgagtgcaaagacatgaagtgttaagtcatgaacaatgactatttcaccatgcttggagaag |
596 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5034474 |
tgaatatagcagcagcagcattagaaggaaaaagaagatgagtgcaaagacatgaagtgttaagtcatgaacaatgactatttcaccatgcttggagaag |
5034573 |
T |
|
| Q |
597 |
tttctaatttcatatcaaaatgaatgaaatagatattcggagattcaaccaaattaaaaagatgtgttgaatgttaaacataaaactggtaaaagatttt |
696 |
Q |
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|||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |
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| T |
5034574 |
tttctaatttcacatcaatatgaatgaaatagatatcaggagattcaaccaaattaaaaagatgtattgaatgttaaacataaaactggtaaaagacttt |
5034673 |
T |
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| Q |
697 |
gaataattattaacattctaagcacataaa-acagattgagtaacaaacgaacatctactagacacaagtttgataataaaatcaagtaagaatataaca |
795 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5034674 |
gaataattattaacattctaagcacataaaggaagattgagtaacaaacgaacatctactagacacaagtttgataataaaatcaagtaagaatataaca |
5034773 |
T |
|
| Q |
796 |
tcctta |
801 |
Q |
| |
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|||||| |
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| T |
5034774 |
tcctta |
5034779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 11 - 366
Target Start/End: Original strand, 5034011 - 5034369
Alignment:
| Q |
11 |
cacagacatgtaacacaaatgatcgatacattgggaaatattgtatccagaacctgaacagcacgccttgaattccaaccacagtatcctctcaaaatta |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5034011 |
cacagacatgtaacacaaatgatcgatacattgggaaatattgtatccagaacctgaacagcacgccttgaattccaaccacagtatcctctcaaaatta |
5034110 |
T |
|
| Q |
111 |
tatctgcctttgtatagttaatgtgtgacaagttaaactgattggccataaaaatgctatagacaaatttgaacaaatcactattatttcaagacacact |
210 |
Q |
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| T |
5034111 |
tatctgcctttgtatagttaatgtgtgacaagttaaactcattggccataaaaatgctatagacaaatttgaacaaatcactattatttcaagacacact |
5034210 |
T |
|
| Q |
211 |
atttatataacaaaactatagcgtggtggaatttgaacaaactgttatctttcactgtccacgagagacaacactagcatagacactagaac---attct |
307 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
5034211 |
atttttataacaaaactatagcgtggtggaatttgaacaaactgttatctttcactgtccacgagagacaacactagcatagacactagaacaatattct |
5034310 |
T |
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| Q |
308 |
ttctgtttatacaaattttatctatacactcatctctaatatcataccatattgatcta |
366 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5034311 |
ttctgtttatacaaattttatctatacactcatctctaatatcataccatattgatcta |
5034369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 21 - 503
Target Start/End: Original strand, 5039670 - 5040142
Alignment:
| Q |
21 |
taacacaaatgatcgatacattgggaaatattgtatccagaacctgaacagcacgccttgaattccaaccacagtatcctctcaaaattatatctgcctt |
120 |
Q |
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|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5039670 |
taacacaaatgatcaataccttgggaaatattgtatccagaacctgaacagcacgccttgaattccaaccacagtatcctctcaaaattatatctgccta |
5039769 |
T |
|
| Q |
121 |
tgtatagttaatgtgtgacaagttaaactgattggccataaaaatgctatagacaaatttgaacaaatcactattatttcaagacacactatttatataa |
220 |
Q |
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|||| |||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5039770 |
tgtaaagttaatgtgtgacaagttaaactcattggccataaaaatgctatatagaaatttgaacaaatcactattatttcaagacacactatttatataa |
5039869 |
T |
|
| Q |
221 |
caaaactatagcgtggtggaatttgaacaaactgttatctttcactgtccacgagagacaacactagcatagacactagaacattctttctgtttataca |
320 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||| || || ||||||||| | | | || | |||||| |||||||||||||| |
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| T |
5039870 |
c-aaactatagcgtggtggaatttgaacaaactgttatctttcactatctgtgattgacaacactggaaaacactagaaaacattttttctgtttataca |
5039968 |
T |
|
| Q |
321 |
aattttatctatacactcatctctaatatcataccatattgatctagattcagagatt--nnnnnnntcccatcaataaaatctatat---tttttgcct |
415 |
Q |
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|||||| ||||||||||| ||||||||||||||||||||||| ||| | |||| ||| |||| | || |||||| || |
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| T |
5039969 |
aatttt------------atctctaatattgtaccatattgatctagattcagatattaaaaaaaaataccataaattaaatttccatttatttttgtct |
5040056 |
T |
|
| Q |
416 |
aatttatatggctcaattatattacaggaccaccaccaacttaaaatgttctcaacaatctgaccactgctttctattgattgaatat |
503 |
Q |
| |
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|||| ||||| ||||||||||||||||||||||||| || ||||| |||||||||| | |||||||||| ||||||||||||||||| |
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| T |
5040057 |
aatt--tatggttcaattatattacaggaccaccacctacataaaaagttctcaacactgtgaccactgccttctattgattgaatat |
5040142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 504 - 642
Target Start/End: Original strand, 2489345 - 2489483
Alignment:
| Q |
504 |
agcagcagcagcattagaaggaaaaagaagatgagtgcaaagacatgaagtgttaagtcatgaacaatgactatttcaccatgcttggagaagtttctaa |
603 |
Q |
| |
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||||||||||||||| ||||| ||||||||||||||||||||||| | ||||| |||| |||||||||| ||||||||| |||| ||||||||||||| |
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| T |
2489345 |
agcagcagcagcattggaaggtaaaagaagatgagtgcaaagacaagtggtgttgagtcgagaacaatgaccatttcaccaggcttcgagaagtttctaa |
2489444 |
T |
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| Q |
604 |
tttcatatcaaaatgaatgaaatagatattcggagattc |
642 |
Q |
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||| | |||||||||||||||||||||||| ||||||| |
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| T |
2489445 |
tttaaaatcaaaatgaatgaaatagatatttagagattc |
2489483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 504 - 603
Target Start/End: Original strand, 2524401 - 2524500
Alignment:
| Q |
504 |
agcagcagcagcattagaaggaaaaagaagatgagtgcaaagacatgaagtgttaagtcatgaacaatgactatttcaccatgcttggagaagtttctaa |
603 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||| ||||||| | |||| || |||||| ||||||||||||| |
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| T |
2524401 |
agcagcagcagcattagaaggcaaaagaagatgagtgcaaagaaatgaagtgttgagtcaataacaatgtcaatttaactatgcttagagaagtttctaa |
2524500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 36 - 124
Target Start/End: Original strand, 25096361 - 25096449
Alignment:
| Q |
36 |
atacattgggaaatattgtatccagaacctgaacagcacgccttgaattccaaccacagtatcctctcaaaattatatctgcctttgta |
124 |
Q |
| |
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|||| |||||||| ||||||||||||||||| ||||| ||||||| |||||||||| ||||||||| || || |||||| |||| |||| |
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| T |
25096361 |
ataccttgggaaaaattgtatccagaacctgcacagcgcgccttgtattccaaccagagtatcctcgcagaactatatccgcctatgta |
25096449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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