View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2816_low_20 (Length: 404)

Name: NF2816_low_20
Description: NF2816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2816_low_20
NF2816_low_20
[»] chr1 (1 HSPs)
chr1 (10-386)||(51611194-51611573)


Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 10 - 386
Target Start/End: Complemental strand, 51611573 - 51611194
Alignment:
Q  10 aagaaaatcgctgtttgaaggagttagttatgcaattacgcatgaaaaactcnnnnnnn-tatagcatgcaccaactgaaagtggtacaccaggttataa 108  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||        ||||||||| ||||||||||||||||||||||||||||||    
T  51611573 aagaaaatcgctgtttgaaggagttagttatgcaattgcgcatgaaaaactcaaaaaaaatatagcatgtaccaactgaaagtggtacaccaggttataa 51611474  T
Q  109 cagatgttgttggatgcttatatatttttaaaaatctaattctcccagtttaggtgctagtcaaaacactaaacagtcaaatcaaatgaaccaactactt 208  Q
    ||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51611473 cagatgttgttggatgcttatatttttt--aaaatctaattctcccagtttaggtgctagtcaaaacactaaacagtcaaatcaaatgaaccaactactt 51611376  T
Q  209 tatttttctacttag----nnnnnnnnnnnnnnnnnnatttgagaggattctacttaaatttgatgattagactaataaaattcatcaaatagaaaagga 304  Q
    |||||||||||||||                      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51611375 tatttttctacttagtttttatttttattttttttttatttgagaggattctacttaaatttgatgattagactaataaaattcatcaaatagaaaagga 51611276  T
Q  305 tatgttaaaaagaatatgctacacnnnnnnngtttgattgtacataccatgaagacaatagtttattatgcattgtcatcct 386  Q
    ||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51611275 tatgttaaaaagaatatgctacactttttttgtttgattgtacataccatgaagacaatagtttattatgcattgtcatcct 51611194  T

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