View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2816_low_22 (Length: 363)

Name: NF2816_low_22
Description: NF2816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2816_low_22
NF2816_low_22
[»] chr6 (1 HSPs)
chr6 (10-345)||(34563581-34563917)


Alignment Details
Target: chr6 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 10 - 345
Target Start/End: Original strand, 34563581 - 34563917
Alignment:
Q  10 aagaatatggttgactaaatttgattggatagtnnnnnnnnntatttgaaggagattggatagtaaaaattgtttattaagattttgattaatttaatat 109  Q
    ||||| |||||||||||||||||||||||||||          | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  34563581 aagaaaatggttgactaaatttgattggatagtaaaaaaaaaaaattgaagtagattggatagtaaaaattgtttattaagattttgattaatttaatat 34563680  T
Q  110 ttaatgtcataggattgaaagtctacgtaaatcaggtctgcacaactggttaaaacnnnnnnn-aaatattctccaaaatgtactaattgaaaactatat 208  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||    
T  34563681 ttaatgtcataggattgaaagtctgcgtaaatcaggtctgcacaactggttaaaacctttttttaaatattctccaaaatgtactaattgaaaactatat 34563780  T
Q  209 acaagttatatattattaattaataaaagtcaaatcattctccaattaataaaattactataagcaggccattaatacctctataagcaaggttctacat 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34563781 acaagttatatattattaattaataaaagtcaaatcattctccaattaataaaattactataagcaggccattaatacctctataagcaaggttctacat 34563880  T
Q  309 gaagtaacagtgacaatctacaaattaaggttgaatc 345  Q
    |||||||||||||||||||||||||||||||||||||    
T  34563881 gaagtaacagtgacaatctacaaattaaggttgaatc 34563917  T

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