View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2816_low_24 (Length: 327)
Name: NF2816_low_24
Description: NF2816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2816_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 7623289 - 7623038
Alignment:
| Q |
1 |
aggagttggatttgatataccaacaagtcattgatgaccacatggataattcaacaaagcctacaaccaaggaacaagaagttgcagatatcatcgatat |
100 |
Q |
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| T |
7623289 |
aggagttggatttgatataccaacaagtcattgatgaccacatggataattcaacaaagcctaaaaccaaggagcaagaagttgcagatatcattgatat |
7623190 |
T |
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| Q |
101 |
atttttgcagatgatgaatgataactcactctcttttgatcttactcttgaccacgtcaaagctgtgcttatggtatgatgaatgaaacttttgatgctt |
200 |
Q |
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| T |
7623189 |
atttttgcagatgatgaatgataactcactctcttttgatcttactcttgaccacgtcaaagctgtgcttatggtatgatgaatgaaacttttgatgctt |
7623090 |
T |
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| Q |
201 |
tattaaacaagatgatctataaatcaatagttaagtttatgatgttaactaaacatatgc |
260 |
Q |
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| T |
7623089 |
tattaaacaagatg--------atcaatagttaagtttatgatgttaactaaacatatgc |
7623038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 7636381 - 7636205
Alignment:
| Q |
1 |
aggagttggatttgatataccaacaagtcattgatgaccacatggataattcaacaaagcctacaaccaaggaacaagaagttgcagatatcatcgatat |
100 |
Q |
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||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||| ||||| ||| |||||||||||||| | ||||| || ||||| |
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| T |
7636381 |
aggagttggatttgatataccaaagagttattgatgaccacatggataattcagcaaggcctaaaactaaggaacaagaagtagatgatattattgatat |
7636282 |
T |
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| Q |
101 |
atttttgcagatgatgaatgataactcactctcttttgatcttactcttgaccacgtcaaagctgtgcttatggtat |
177 |
Q |
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| T |
7636281 |
cttattgcagatgatgaatgatcactcactctcttttgatctcactcttgaccacatcaaagctgtgcttatggtat |
7636205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 7629598 - 7629421
Alignment:
| Q |
1 |
aggagttggatttgatataccaacaagtcattgatgaccacatggataattcaacaaagcctacaaccaaggaacaagaagttgcagatatcatcgatat |
100 |
Q |
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||||||||||||||||||||||| ||| |||||||||||||||||| ||||| ||| ||||| ||| |||||||||||||| | ||||| || ||||| |
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| T |
7629598 |
aggagttggatttgatataccaaagagttattgatgaccacatggattattcagcaaggcctaaaactaaggaacaagaagtagatgatattattgatat |
7629499 |
T |
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| Q |
101 |
atttttgcagatgatgaatgataactcactctcttttgatcttactcttgaccacgtcaaagctgtgcttatggtatg |
178 |
Q |
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| T |
7629498 |
cttattacaaatgatgaatgatcattcactctcttttgatctcactctcgaccacatcaaagctgtgcttatggtatg |
7629421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 279 - 312
Target Start/End: Complemental strand, 7623019 - 7622986
Alignment:
| Q |
279 |
gcagaacatctttattgcaggaacagacacaagt |
312 |
Q |
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| T |
7623019 |
gcagaacatctttattgcaggaacagacacaagt |
7622986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 279 - 312
Target Start/End: Complemental strand, 7627570 - 7627537
Alignment:
| Q |
279 |
gcagaacatctttattgcaggaacagacacaagt |
312 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
7627570 |
gcagaacatctttattgcaggaacagacacaagt |
7627537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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