View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2816_low_27 (Length: 292)
Name: NF2816_low_27
Description: NF2816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2816_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 29 - 279
Target Start/End: Complemental strand, 10698683 - 10698433
Alignment:
| Q |
29 |
aatgctatatatacatcattatacacagtgagaggttccatattcaactgttctagctccactgaaaagaaagaactactagtagctagtttcaatatca |
128 |
Q |
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| T |
10698683 |
aatgctatatatacattattatacatagtgagaggttccatattcaactgttctagctccactgaaaaaaaagaactactagtagctagtttaaatatca |
10698584 |
T |
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| Q |
129 |
tggctaatgtggtaaggctaaaatccaattttcatagaggtcatgaagtgaccattaatgttgtaggaagtgttcatgtatataataacatcatgggagt |
228 |
Q |
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| T |
10698583 |
tggctaatgtggtaaggctaaaatccaattttcatagaggtcatgaagtgaccattaatgttgtaggaagtgttcatgtatataataacatcatgggaat |
10698484 |
T |
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| Q |
229 |
ggaaactaatcctcaacatggccttgtagcctttattttctttgtactcct |
279 |
Q |
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| T |
10698483 |
ggaaactaatcctcaacatggccttgtagcctttattttctttgtactcct |
10698433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 126 - 279
Target Start/End: Complemental strand, 10690650 - 10690500
Alignment:
| Q |
126 |
tcatggctaatgtggtaaggctaaaatccaattttcatagaggtcatgaagtgaccattaatgttgtaggaagtgttcatgtatataataacatcatggg |
225 |
Q |
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| T |
10690650 |
tcatgggtgatgtggtaagtccaaggtccaattttcttagaggtcatgaagtgaccataaatgttgtaggaagtgttcatgtc---aaaaacatcatggg |
10690554 |
T |
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| Q |
226 |
agtggaaactaatcctcaacatggccttgtagcctttattttctttgtactcct |
279 |
Q |
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| T |
10690553 |
agtagaaactaatcctcaacatggccttgtagccttcattttctttgtactcct |
10690500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 279
Target Start/End: Complemental strand, 10707750 - 10707642
Alignment:
| Q |
168 |
gtcatgaagtgaccattaatgttgtaggaagtgttcatgtatataataacatcatgggagtggaaactaatcctcaacatggccttgtagcctttatttt |
267 |
Q |
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|||||||||||||||| ||||||||| | |||| |||| || || |||||||||||| ||||| || |||| |||| ||||| | ||||| ||||| |
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| T |
10707750 |
gtcatgaagtgaccataaatgttgtaagtgttgttaatgtttacaa---catcatgggagtagaaaccaaccctctacatagccttatggccttcatttt |
10707654 |
T |
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| Q |
268 |
ctttgtactcct |
279 |
Q |
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| T |
10707653 |
ctttgtactcct |
10707642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 277
Target Start/End: Original strand, 33777246 - 33777310
Alignment:
| Q |
213 |
ataacatcatgggagtggaaactaatcctcaacatggccttgtagcctttattttctttgtactc |
277 |
Q |
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| T |
33777246 |
ataacatcatgggtgtagaaaccaatccttttcatggccttatggccttcattttctttgtactc |
33777310 |
T |
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