View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2816_low_29 (Length: 279)
Name: NF2816_low_29
Description: NF2816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2816_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 9 - 126
Target Start/End: Original strand, 16374982 - 16375099
Alignment:
| Q |
9 |
acatcatcaaaacaagaactatactagggtatggacaaatttcatcagagacatactagtatagtaagtacaaatttaatgatatccaatcaactgactg |
108 |
Q |
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| T |
16374982 |
acatcatcaaaacaagaactatactagggtatggacaaatttcctcatagacatactagtatagtaagtacaaatttaatgatatccaatcaactgactg |
16375081 |
T |
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| Q |
109 |
agatcagccacacattgt |
126 |
Q |
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| T |
16375082 |
agatcagccacaccttgt |
16375099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 176 - 259
Target Start/End: Original strand, 16375098 - 16375181
Alignment:
| Q |
176 |
gtgctataacaaccttagattctagcaatgggctactgcattgcccataactcaccctctcagtccttgcatgacgtgctgact |
259 |
Q |
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| T |
16375098 |
gtgctataacaaccttagattctagcaatgggctactgcattgcccataactcaccctctcagtccttgcatgacgtgctgact |
16375181 |
T |
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