View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2816_low_3 (Length: 645)
Name: NF2816_low_3
Description: NF2816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2816_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 508; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 18 - 537
Target Start/End: Original strand, 35481930 - 35482449
Alignment:
| Q |
18 |
tcaacgcttgttgaagaaaagcagttcttggatcagaaggattcttattctccttactttgtctgtaatacaaataagcaagacaatctcctgggagatg |
117 |
Q |
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| T |
35481930 |
tcaacgcttgttgaagaaatgcagttcttggatcagaaggattcttattctccttactttgtctgtaatacaaataagcaagacaatctcctgggagatg |
35482029 |
T |
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| Q |
118 |
ataatcaaaactttcccagtgcttttcgccgcgtctgctagggaaatcctttatcgaacgagctagatcttgagcacctttaccatcatatctcttctcc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35482030 |
ataatcaaaactttcccagtgcttttcgccgcgtctgctagggaaatcctttatcgaacgagctagatcttgagcacctttaccatcatatctcttctcc |
35482129 |
T |
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| Q |
218 |
acaatgaaacgtgctgcagcagcacgttgggaagtggagaggagacgaatttcatataaaacttcagcaccaccgctatcaaagtaagatagaatctctt |
317 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35482130 |
acaatgaaacgcgctgcagcagcacgttgggaagtggagaggagacgaatttcatataaaacttcagcaccaccgctatcaaagtaagatagaatctctt |
35482229 |
T |
|
| Q |
318 |
catcagtgttggcctgtacaagagtgtcacgaacttgagttgcgactatgatacgattctgttcgacaccggtgatgccggtggtttcttcaagggtggg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35482230 |
catcagtgttggcctgtacaagagtgtcacgaacttgagttgcgactatgatacgattctgttcgacaccggtgatgccggtggtttcttcaagggtggg |
35482329 |
T |
|
| Q |
418 |
aggtgaaaagccttcacggaggagggaagtgatgagaggagcgtattcgtgccaggcaccgagacggttggcgaggatgtcaatgcgacctgggatgtcg |
517 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
35482330 |
aggtgaaaagccttcacggaggagggaagtgatgagaggagcgtattcgtgccaggcaccgagacggttggcgaggatgtcgatgcgacctgggatgtcg |
35482429 |
T |
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| Q |
518 |
aggttgtcgtattttgatgg |
537 |
Q |
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|||||||||||||||||||| |
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| T |
35482430 |
aggttgtcgtattttgatgg |
35482449 |
T |
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