View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2816_low_38 (Length: 241)
Name: NF2816_low_38
Description: NF2816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2816_low_38 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 15 - 223
Target Start/End: Complemental strand, 7055614 - 7055410
Alignment:
| Q |
15 |
gatgaacagattaaggagtgtgaagagcttggagttttggttgatagagatgatcagggtaccattcttcagattttcactaagcctgttggagataggt |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7055614 |
gatgaacagattaaggagtgtgaagagcttggaattttggttgatagagatgatcagggtactattcttcagattttcactaagcctgttggagataggt |
7055515 |
T |
|
| Q |
115 |
atgaaatgcacgtactctttgaatcatatcaatataatactcattttattgccttgatttcattattatcaatttgttttatatattgggcttggaattc |
214 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7055514 |
atgaaatgc----actctttgaatcatatcaatataatactcattttattgccttgatttcattattatcaatttgttttatatattgggcttggaattc |
7055419 |
T |
|
| Q |
215 |
ttatttttg |
223 |
Q |
| |
|
||||||||| |
|
|
| T |
7055418 |
ttatttttg |
7055410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 15 - 116
Target Start/End: Complemental strand, 39641752 - 39641651
Alignment:
| Q |
15 |
gatgaacagattaaggagtgtgaagagcttggagttttggttgatagagatgatcagggtaccattcttcagattttcactaagcctgttggagataggt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||| |||||||| |||||||||||| |
|
|
| T |
39641752 |
gatgaacagattaaggagtgtgaagagcttgggattttggttgatagagatgatcagggtactctgcttcagatttttactaagcccattggagataggt |
39641653 |
T |
|
| Q |
115 |
at |
116 |
Q |
| |
|
|| |
|
|
| T |
39641652 |
at |
39641651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 39637123 - 39637015
Alignment:
| Q |
15 |
gatgaacagattaaggagtgtgaagagcttggag-ttttggttgatagagatgatcagggtaccattcttcagattttcactaagcctgttggagatagg |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||| | ||||||||||| ||||||||| |||| |||||| |
|
|
| T |
39637123 |
gatgaacagattaaggagtgtgaagagctttgggattttggttgatagagatgatcagggtactttgcttcagatttttactaagcctattggtgatagg |
39637024 |
T |
|
| Q |
114 |
tatgaaatg |
122 |
Q |
| |
|
|||| |||| |
|
|
| T |
39637023 |
tatgtaatg |
39637015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 15 - 117
Target Start/End: Original strand, 39680497 - 39680599
Alignment:
| Q |
15 |
gatgaacagattaaggagtgtgaagagcttggagttttggttgatagagatgatcagggtaccattcttcagattttcactaagcctgttggagataggt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| | ||||||||||| || |||||| |||| ||||||| |
|
|
| T |
39680497 |
gatgaacagattaaggagtgtgaagagcttgggattctggttgatagagatgatcagggtactctgcttcagatttttaccaagcctattggtgataggt |
39680596 |
T |
|
| Q |
115 |
atg |
117 |
Q |
| |
|
||| |
|
|
| T |
39680597 |
atg |
39680599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University