View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2816_low_40 (Length: 237)
Name: NF2816_low_40
Description: NF2816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2816_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 14 - 221
Target Start/End: Complemental strand, 49151401 - 49151195
Alignment:
| Q |
14 |
gagatgaatcactgttaagcggcggtgaaaactttgtaccaatattatggtgacgaaagatggtctttccttttttcttcnnnnnnnnnnnnnngattgt |
113 |
Q |
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| T |
49151401 |
gagatgaatcactattaagcggtggtgaaaactttgtaccaatattatggtgacaaaagatggtctttccttttttcttaaaaataaaaataaa-attgt |
49151303 |
T |
|
| Q |
114 |
ctttccttttcaatttaggcatgggttaaatttaatatcgcttaattatattaaaataatgggctcaatccctaagttagtttataattgtaaatttcac |
213 |
Q |
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| T |
49151302 |
ctttccttttcaatttaggcatgggttaaatttaatatcgcttaattatatcaaaataatgggctcaatccctaagttagtttataattgtaaatttcac |
49151203 |
T |
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| Q |
214 |
cataattt |
221 |
Q |
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|||||||| |
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| T |
49151202 |
cataattt |
49151195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 778030 - 777992
Alignment:
| Q |
14 |
gagatgaatcactgttaagcggcggtgaaaactttgtac |
52 |
Q |
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| T |
778030 |
gagatgaatcaatgttaagcggcggtggaaactttgtac |
777992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 6762654 - 6762703
Alignment:
| Q |
15 |
agatgaatcactgttaagcggcggtgaaaactttgtaccaatattatggt |
64 |
Q |
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|||| |||||||||||||||| |||| ||||||||| | ||||||||||| |
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| T |
6762654 |
agattaatcactgttaagcggtggtggaaactttgtgctaatattatggt |
6762703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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