View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2816_low_42 (Length: 235)
Name: NF2816_low_42
Description: NF2816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2816_low_42 |
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Alignment Details
Target: chr8 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 43461263 - 43461480
Alignment:
| Q |
1 |
acacactatgacaataaatggacaaataatttgnnnnnnnctctattattaagnnnnnnnttattgctcatttttccaacactattacccagccgtacaa |
100 |
Q |
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| T |
43461263 |
acacactatgacaataaatggacaaataatttgtttttttctctattattaagaaaaaaattattgctcatttttccaacattattacccagccgtacaa |
43461362 |
T |
|
| Q |
101 |
tacaataatggaagaatcttgatgatatacatgtgacaaataatttttagataagaacgaggtctacttgtaacaaggtgaggtaattcttgtccatata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
43461363 |
tacaataatggaagaatcttgatgatatacatgtgacaaataatttttagataagaacgaggtctacttgtaacaaggtgagataattcttgtccatata |
43461462 |
T |
|
| Q |
201 |
cgtatatatagtgcttta |
218 |
Q |
| |
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|||||||||||||||||| |
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| T |
43461463 |
cgtatatatagtgcttta |
43461480 |
T |
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