View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2816_low_5 (Length: 601)
Name: NF2816_low_5
Description: NF2816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2816_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-166; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 288 - 596
Target Start/End: Complemental strand, 4787705 - 4787397
Alignment:
| Q |
288 |
tggtactaatgatgattccaaagcccaacatatatcgttccattgatttatttatttatatatgcttacaaatttgaatagggaatctaacatttcaaaa |
387 |
Q |
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| T |
4787705 |
tggtactaatgatgattccaaagcccaacatatatcgttccattgatttatttatttatatatgcttacaaattagaatagggaatctaacatttcaaaa |
4787606 |
T |
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| Q |
388 |
caacatcaagattacccacacaaacaaaacctagaagcattaaaccgtaatttattcttgatctataaaatggaactaatgcttcgttcaattatatttg |
487 |
Q |
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| T |
4787605 |
caacatcaagattacccacacaaacaaaacctagaagcattaaaccgtaatttattcttgatctataaaatggaactaatgcttcgttcaattatatttg |
4787506 |
T |
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| Q |
488 |
actggattatatgcccattcattgattgcacacaccccatactctttattagtgttccttttgatatgcatataaccctccattccccatgacgtgcccc |
587 |
Q |
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| T |
4787505 |
actggattatatgcccattcattgattgcacacaccccatactctttattagtgttccttttgatatgcatataaccctccattccccatgacgtgcccc |
4787406 |
T |
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| Q |
588 |
tttgcttct |
596 |
Q |
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||| |||| |
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| T |
4787405 |
attggttct |
4787397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 19 - 272
Target Start/End: Complemental strand, 4789085 - 4788833
Alignment:
| Q |
19 |
acaatggtgtaaaataacaaagcttaagactcattctcgcaacaaactcgccataattcactcttgttttgtcactctttttactctatgtgtttgttag |
118 |
Q |
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| T |
4789085 |
acaatggtgtgaaatcacaaagcttaagactcattctcgcaacaaactcgccagaattcactcttgttttgtcactctttt-actctatgtgtttgttag |
4788987 |
T |
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| Q |
119 |
acttgaaactgatttcattctagcaatttaacaaccaaaggaatgcatnnnnnnnnnnnnnnnnngattgcttctagctcaagctatctagctccaacgg |
218 |
Q |
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| T |
4788986 |
acttgaaactgatttcattctagcaatttaacaaccaaaggaatgcattatatatttatatatatgattgcttctagctcaagctatctagctccaacgg |
4788887 |
T |
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| Q |
219 |
ttatagcaaactaattactgtgaacctcagtcaccatgacagttaaaagcagtt |
272 |
Q |
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| T |
4788886 |
ttatagcaaactaattactgtgaacctcagtcaccatgacagttaaaagcagtt |
4788833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 478 - 596
Target Start/End: Complemental strand, 4782769 - 4782651
Alignment:
| Q |
478 |
attatatttgactggattatatgcccattcattgattgcacacaccccatactctttattagtgttccttttgatatgcatataaccctccattccccat |
577 |
Q |
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||||||||||||||||||||| |||||| ||| || |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
4782769 |
attatatttgactggattataagcccatgaatttatagcacacaccccatactttttatttgtgttccttttgatatgcatataaccctccattccccat |
4782670 |
T |
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| Q |
578 |
gacgtgcccctttgcttct |
596 |
Q |
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|||||||||| ||| |||| |
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| T |
4782669 |
gacgtgccccattggttct |
4782651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 189 - 223
Target Start/End: Complemental strand, 20724342 - 20724308
Alignment:
| Q |
189 |
cttctagctcaagctatctagctccaacggttata |
223 |
Q |
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||||||||||||||||||||| ||||||||||||| |
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| T |
20724342 |
cttctagctcaagctatctagttccaacggttata |
20724308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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