View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2816_low_8 (Length: 548)
Name: NF2816_low_8
Description: NF2816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2816_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 512; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 19 - 542
Target Start/End: Complemental strand, 39567769 - 39567246
Alignment:
| Q |
19 |
gtgtcatcacttatttatcgaagtagaatgacatcttagacttcggtaaatgaagactctccaacagtacgatgacagtgttggcacttcttttatcgaa |
118 |
Q |
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| T |
39567769 |
gtgtcatcacttatttatcgaagtagaatgacatcttagacttcggtaaatgaagactctccaacagtacgatgacagtgttggcatttcttttatcgaa |
39567670 |
T |
|
| Q |
119 |
gtagacaaacatctttagctttcgtcgacgaagttgcttcactaaattgactctgtgtcattcttttatagaagtagaaagatgtcttgtacgtcagtag |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39567669 |
gtagacaaacatctttagctttcgtcgacgaagttgcttcactaaattgactctgtgtcattcttttatagaagtagaaagatgtcttgtacgtcagtag |
39567570 |
T |
|
| Q |
219 |
ttgaaagacactttgttctataataatgaccttcaataacttgcacaattatcatgtaggcatcttgtctaaacaacattgccgacttgggggcaactgt |
318 |
Q |
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| T |
39567569 |
ttgaaagacacttcgttctataataatgaccttcaataaattgcacaattatcatgtaggcatcttgtctaaacaacattgccgacttgggggcaactgt |
39567470 |
T |
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| Q |
319 |
tttggactagaccaatgatcaatccagacttcgccttcatgaagacccattccttggattcactctaagctaaagggttgctgtcaaaattactgtacgt |
418 |
Q |
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| T |
39567469 |
tttggactagaccaatgatcaatccagacttcgccttcatgaagacccattccttggattcactctaagctaaagggttgctgtcaaaattactgtacgt |
39567370 |
T |
|
| Q |
419 |
gtctaattgtctaaatagagatccaaccccaagagaaaggtatgcactgctaattctagctttcagtctctccaattcttactggcttgagcactgtaat |
518 |
Q |
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| T |
39567369 |
gtctaattgtctaaatagagatccaaccccaagagaaaggtatgcactgctaattctagctttcagtctctccaattcttactggcttgagcactgtaat |
39567270 |
T |
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| Q |
519 |
gcttgcaggtactccctttgcttc |
542 |
Q |
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| T |
39567269 |
gcttgcaggtactccctttgcttc |
39567246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 20 - 509
Target Start/End: Complemental strand, 39573234 - 39572747
Alignment:
| Q |
20 |
tgtcatcacttatttatcgaagtagaatgacatcttagacttcggtaaatgaagactctccaacagtacgatgacagtgttggcacttcttttatcgaag |
119 |
Q |
| |
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||||||||||| ||||||| |||||||||||||||| ||||| |||| |||||||||||||||| || |||||||||||| ||||||||||| |||| |
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| T |
39573234 |
tgtcatcacttttttatcgtagtagaatgacatcttggactttggtagatgaagactctccaactgttcgatgacagtgtcatgacttcttttattgaag |
39573135 |
T |
|
| Q |
120 |
tagacaaacatctttagctttcgtcgacgaagttgcttcactaaattgactctgt---gtca-ttcttttatagaagtagaaagatgtcttgtacgtcag |
215 |
Q |
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| T |
39573134 |
tagaatgacatctttggttttcatcgatgaagtcgcctcactaaattgatgttgtgccgtcacttcttttatcaaagtagaatgacaacttctacgccaa |
39573035 |
T |
|
| Q |
216 |
tagttgaaagacactttgttctataataatgaccttcaataacttgcacaattatcatgtaggcatcttgtctaaacaacattgccgacttgggggcaac |
315 |
Q |
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| T |
39573034 |
tagttg-aagacacgtggttctataaaaataatcttcaacacttagcacaattatcaagtaggatacctgtctctataacattgccgacttgggggcatc |
39572936 |
T |
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| Q |
316 |
tgttttggactagaccaatgatcaatccagacttcgccttcatgaagacccattccttggattcactctaagctaaagggttgctgtcaaaattactgta |
415 |
Q |
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|||||||||| || ||||||| |||| |||| ||| |||||||||| || ||||||| | | ||| ||||||||||||||||| |||||| || |||| |
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| T |
39572935 |
tgttttggacaaggccaatgaacaatgcagatttctccttcatgaatccctattccttcggtccaccctaagctaaagggttgccttcaaaaatattgta |
39572836 |
T |
|
| Q |
416 |
cgtgtctaattgtctaaatagagatccaaccccaagagaaaggtatgcactgctaattctagctttcagtctctccaattcttactggcttgag |
509 |
Q |
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| T |
39572835 |
-----caacatgtatatatagagatcaacctctaagagaaatgtatgcacagctaattctagctatcactctctcaaaattttactgacttgag |
39572747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 357 - 542
Target Start/End: Complemental strand, 39563503 - 39563324
Alignment:
| Q |
357 |
atgaagacccattccttggattcactctaagctaaagggttgctgtcaaaattactgtacgtgtctaattgtctaaatagagatccaaccccaagagaaa |
456 |
Q |
| |
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||||||||||||||||| |||||||||||||||||| || | |||||||||||| ||||| |||||| |||||||||||||||| | |||||||| |
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| T |
39563503 |
atgaagacccattccttcgattcactctaagctaaaaggctactgtcaaaattattgtacatgtcta------taaatagagatccaactctaagagaaa |
39563410 |
T |
|
| Q |
457 |
ggtatgcactgctaattctagctttcagtctctccaattcttactggcttgagcactgtaatgcttgcaggtactccctttgcttc |
542 |
Q |
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| T |
39563409 |
ggtatgcactgctacttctagctctcactctctcgaattcttactgaattaagcgttacaatgcttacaggtactccatttgcttc |
39563324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 89 - 329
Target Start/End: Complemental strand, 39564872 - 39564641
Alignment:
| Q |
89 |
gatgacagtgttggcacttcttttatcgaagtagacaaacatctttagctttcgtcgacgaagttgcttcactaaattgactctgtgtcatt--ctttta |
186 |
Q |
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||||||| ||| ||||||||||||||||||||||| |||||||| || || | |||||||| ||||||||| |||||| ||||||||| ||||| |
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| T |
39564872 |
gatgacaatgtcggcacttcttttatcgaagtagaatgacatctttggcctttgctgacgaagtcgcttcactatattgacgttgtgtcattaccttttt |
39564773 |
T |
|
| Q |
187 |
tagaagtagaaagatgtcttgtacgtcagtagttgaaagacactttgttctataataatgaccttcaataacttgcacaattatcatgtaggcatcttgt |
286 |
Q |
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| T |
39564772 |
ta----tagaatgacatcttgtaggtcaataattgaa-gacacttcgttggataataatgaccttcaatacattgcacaattatcaagcaggcatcttgt |
39564678 |
T |
|
| Q |
287 |
ctaaacaacattgccgacttgggggcaactgttttggactaga |
329 |
Q |
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||||| ||||||||| |||||||||||||||||||||| |
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| T |
39564677 |
-----caacactgccgactt-ggggcaactgttttggactaga |
39564641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 66
Target Start/End: Complemental strand, 39564997 - 39564954
Alignment:
| Q |
23 |
catcacttatttatcgaagtagaatgacatcttagacttcggta |
66 |
Q |
| |
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|||||||| |||||||||||||||||| ||||| |||||||||| |
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| T |
39564997 |
catcacttctttatcgaagtagaatgaaatcttggacttcggta |
39564954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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