View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2816_low_9 (Length: 541)

Name: NF2816_low_9
Description: NF2816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2816_low_9
NF2816_low_9
[»] chr1 (1 HSPs)
chr1 (103-463)||(37368303-37368651)
[»] scaffold0003 (2 HSPs)
scaffold0003 (7-44)||(178582-178619)
scaffold0003 (7-44)||(185523-185560)
[»] chr5 (4 HSPs)
chr5 (7-44)||(3692688-3692725)
chr5 (7-44)||(3874062-3874099)
chr5 (41-73)||(10027758-10027790)
chr5 (41-73)||(30343776-30343808)
[»] chr3 (1 HSPs)
chr3 (7-44)||(11371384-11371421)
[»] scaffold0262 (1 HSPs)
scaffold0262 (41-73)||(21777-21809)
[»] scaffold0225 (1 HSPs)
scaffold0225 (41-73)||(11712-11744)
[»] scaffold0118 (2 HSPs)
scaffold0118 (41-73)||(22943-22975)
scaffold0118 (41-73)||(25898-25930)
[»] scaffold0029 (1 HSPs)
scaffold0029 (41-73)||(139688-139720)
[»] scaffold0002 (1 HSPs)
scaffold0002 (41-73)||(317154-317186)
[»] chr8 (1 HSPs)
chr8 (41-73)||(21111328-21111360)
[»] chr7 (1 HSPs)
chr7 (41-73)||(42234765-42234797)
[»] chr4 (1 HSPs)
chr4 (41-73)||(55556508-55556540)
[»] chr2 (3 HSPs)
chr2 (41-73)||(24248535-24248567)
chr2 (41-73)||(24249109-24249141)
chr2 (41-73)||(24261003-24261035)


Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 103 - 463
Target Start/End: Complemental strand, 37368651 - 37368303
Alignment:
Q  103 gctacttatgcattctaacatttacaatttcatttcatgtatatgtgaaattgaacagttgctgtagatggtgagctgaatggagggcaaaacatagtaa 202  Q
    ||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||| |||| ||| ||||||||| ||||||||||| |||||||||    
T  37368651 gctacttatgcattctaacatgtacaatatcatttcatatatatgtgaaattgaacagtggctgcagagggtgagctggatggagggcaagacatagtaa 37368552  T
Q  203 aggctttatcatgctttgaaaataagctcataagtgatcgatatttgatggcatttgttgatgaatacgacttcaggttaacatattcttttcttttatt 302  Q
    ||||||||||||||||||||||||||||| ||||||| | | |||| |||||||||||||||||||  ||             |||||||||||| ||||    
T  37368551 aggctttatcatgctttgaaaataagctcgtaagtgaccaacatttaatggcatttgttgatgaatgaga-------------tattcttttcttatatt 37368465  T
Q  303 tattttggctgttcttgtattcttcctttatagatttatgctgggtgtgatgatgcatatagattaaacccatctgggaatattagggtgccaacagagg 402  Q
    ||||||||||||| ||| || ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  37368464 tattttggctgtttttgaatccttccttcacagatttatgctgggtgtgatgatgcatatagattaaacccatctgggaatattagggtgccaccagagg 37368365  T
Q  403 ccattg-ctttttctgtagtggaccatgtctcatcgaaacacagctattgcttgaatgcatt 463  Q
    ||| ||  |||||||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  37368364 ccactgattttttctgtagtggaccatgtctcattgaaacacagctagtgcttgaatgcatt 37368303  T

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Target: scaffold0003 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 178619 - 178582
Alignment:
Q  7 tagattatactaattacttggactagattctactaatt 44  Q
    |||||| |||||||||||||||||||||||||||||||    
T  178619 tagattctactaattacttggactagattctactaatt 178582  T

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Target: scaffold0003; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 185560 - 185523
Alignment:
Q  7 tagattatactaattacttggactagattctactaatt 44  Q
    |||||| |||||||||||||||||||||||||||||||    
T  185560 tagattctactaattacttggactagattctactaatt 185523  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 3692725 - 3692688
Alignment:
Q  7 tagattatactaattacttggactagattctactaatt 44  Q
    |||||| |||||||||||||||||||||||||||||||    
T  3692725 tagattctactaattacttggactagattctactaatt 3692688  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 3874062 - 3874099
Alignment:
Q  7 tagattatactaattacttggactagattctactaatt 44  Q
    |||||| |||||||||||||||||||||||||||||||    
T  3874062 tagattctactaattacttggactagattctactaatt 3874099  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 41 - 73
Target Start/End: Complemental strand, 10027790 - 10027758
Alignment:
Q  41 aatttcaagacttggaccagattctactaatta 73  Q
    ||||||||||||||||| |||||||||||||||    
T  10027790 aatttcaagacttggactagattctactaatta 10027758  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 41 - 73
Target Start/End: Original strand, 30343776 - 30343808
Alignment:
Q  41 aatttcaagacttggaccagattctactaatta 73  Q
    ||||||||||||||||| |||||||||||||||    
T  30343776 aatttcaagacttggactagattctactaatta 30343808  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 11371421 - 11371384
Alignment:
Q  7 tagattatactaattacttggactagattctactaatt 44  Q
    |||||| |||||||||||||||||||||||||||||||    
T  11371421 tagattctactaattacttggactagattctactaatt 11371384  T

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Target: scaffold0262 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 41 - 73
Target Start/End: Complemental strand, 21809 - 21777
Alignment:
Q  41 aatttcaagacttggaccagattctactaatta 73  Q
    ||||||||||||||||| |||||||||||||||    
T  21809 aatttcaagacttggactagattctactaatta 21777  T

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Target: scaffold0225 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0225
Description:

Target: scaffold0225; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 41 - 73
Target Start/End: Original strand, 11712 - 11744
Alignment:
Q  41 aatttcaagacttggaccagattctactaatta 73  Q
    ||||||||||||||||| |||||||||||||||    
T  11712 aatttcaagacttggactagattctactaatta 11744  T

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Target: scaffold0118 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 41 - 73
Target Start/End: Original strand, 22943 - 22975
Alignment:
Q  41 aatttcaagacttggaccagattctactaatta 73  Q
    ||||||||||||||||| |||||||||||||||    
T  22943 aatttcaagacttggactagattctactaatta 22975  T

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Target: scaffold0118; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 41 - 73
Target Start/End: Original strand, 25898 - 25930
Alignment:
Q  41 aatttcaagacttggaccagattctactaatta 73  Q
    ||||||||||||||||| |||||||||||||||    
T  25898 aatttcaagacttggactagattctactaatta 25930  T

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Target: scaffold0029 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 41 - 73
Target Start/End: Original strand, 139688 - 139720
Alignment:
Q  41 aatttcaagacttggaccagattctactaatta 73  Q
    ||||||||||||||||| |||||||||||||||    
T  139688 aatttcaagacttggactagattctactaatta 139720  T

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Target: scaffold0002 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 41 - 73
Target Start/End: Original strand, 317154 - 317186
Alignment:
Q  41 aatttcaagacttggaccagattctactaatta 73  Q
    ||||||||||||||||| |||||||||||||||    
T  317154 aatttcaagacttggactagattctactaatta 317186  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 41 - 73
Target Start/End: Original strand, 21111328 - 21111360
Alignment:
Q  41 aatttcaagacttggaccagattctactaatta 73  Q
    ||||||||||||||||| |||||||||||||||    
T  21111328 aatttcaagacttggactagattctactaatta 21111360  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 41 - 73
Target Start/End: Complemental strand, 42234797 - 42234765
Alignment:
Q  41 aatttcaagacttggaccagattctactaatta 73  Q
    ||||||||||||||||| |||||||||||||||    
T  42234797 aatttcaagacttggactagattctactaatta 42234765  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 41 - 73
Target Start/End: Original strand, 55556508 - 55556540
Alignment:
Q  41 aatttcaagacttggaccagattctactaatta 73  Q
    ||||||||||||||||| |||||||||||||||    
T  55556508 aatttcaagacttggactagattctactaatta 55556540  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 41 - 73
Target Start/End: Complemental strand, 24248567 - 24248535
Alignment:
Q  41 aatttcaagacttggaccagattctactaatta 73  Q
    ||||||||||||||||| |||||||||||||||    
T  24248567 aatttcaagacttggactagattctactaatta 24248535  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 41 - 73
Target Start/End: Complemental strand, 24249141 - 24249109
Alignment:
Q  41 aatttcaagacttggaccagattctactaatta 73  Q
    ||||||||||||||||| |||||||||||||||    
T  24249141 aatttcaagacttggactagattctactaatta 24249109  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 41 - 73
Target Start/End: Original strand, 24261003 - 24261035
Alignment:
Q  41 aatttcaagacttggaccagattctactaatta 73  Q
    ||||||||||||||||| |||||||||||||||    
T  24261003 aatttcaagacttggactagattctactaatta 24261035  T

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