View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2817_low_3 (Length: 668)
Name: NF2817_low_3
Description: NF2817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2817_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 621; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 621; E-Value: 0
Query Start/End: Original strand, 10 - 650
Target Start/End: Original strand, 34787829 - 34788469
Alignment:
| Q |
10 |
tgagatgaagaataagtttattaatcatgctcggaatgtttgggaacgcgcggttactcttttgccgcgggttgatcagttgtggtataagtatattcat |
109 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34787829 |
tgagatgaagaataagtttattaatcatgctcggaatgtttgggatcgcgcggttactcttttgccgcgggttgatcagttgtggtataagtatattcat |
34787928 |
T |
|
| Q |
110 |
atggaggagatgcttggcaatgttgcgggggcgaggctggttttcgagagatggatgaagtggatgccggatcagcaaggatggttatcttatataaaat |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34787929 |
atggaggagatgcttggcaatgttgcgggggcgaggctggttttcgagagatggatgaagtggatgccggatcagcaaggatggttatcttatataaaat |
34788028 |
T |
|
| Q |
210 |
ttgagcttagatataatgagattgaacgtgcgagagggattttcgagagatttgttttgtgtcatcctagggttggtgcttggattcgttatgcaaagtt |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34788029 |
ttgagcttagatataatgagattgaacgtgcgagagggattttcgagagatttgttttgtgtcatcctagggttggtgcttggattcgttatgcaaagtt |
34788128 |
T |
|
| Q |
310 |
tgagatgaagaatggcgaggttcctaaggcgaggattgtttatgaaagagcggtggagctagcggatgatgaggaagcagagctgctttttgtggcgttt |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34788129 |
tgagatgaagaatggcgaggttcctaaggcgaggattgtttatgaaagagcggtggagctagcggatgatgaggaagcagagctgctttttgtggcgttt |
34788228 |
T |
|
| Q |
410 |
gcggagtttgaggaaaggtgtaaggaggcagggcgtgcgaggtgtatttataaatttgcacttgatcatattccgaaggggagggctgaggttttgtatc |
509 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34788229 |
gcggagtttgaggaaaggtgtaaggaggtagggcgtgcgaggtgtatttataaatttgcacttgatcatattccgaaggggagggctgaggttttgtatc |
34788328 |
T |
|
| Q |
510 |
ggaagtttgtagcatttgagaaacagaatggtgatagggaagggattgaggatgctattgttgggaagagaaggtttcagtatgaagatgaagttatgaa |
609 |
Q |
| |
|
||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34788329 |
ggaagtttgcagcatttgagaaacagtatggtgatagggaagggattgaggatgctattgttgggaagagaaggtttcagtatgaagatgaagttatgaa |
34788428 |
T |
|
| Q |
610 |
aaatccattgaattatgattcgtggtttgattatataagat |
650 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||| |
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| T |
34788429 |
aaatccattgaattatgatttgtggtttgattatataagat |
34788469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 498; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 10 - 650
Target Start/End: Complemental strand, 2293368 - 2292725
Alignment:
| Q |
10 |
tgagatgaagaataagtttattaatcatgctcggaatgtttgggaacgcgcggttactcttttgccgcgggttgatcagttgtggtataagtatattcat |
109 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||||||||||| ||||| |||||||||||||| || || ||||||||||||||||||||||||||| |
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|
| T |
2293368 |
tgagatgaagaataagtttattaaccatgcgaggaatgtttgggatcgcgctgttactcttttgccacgagtggatcagttgtggtataagtatattcat |
2293269 |
T |
|
| Q |
110 |
atggaggagatgcttggcaatgttgcgggggcgaggctggttttcgagagatggatgaagtggatgccggatcagcaaggatggttatcttatataaaat |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
2293268 |
atggaggagatgcttggcaatgttgcgggggcgagacaggtttttgagagatggatgaaatggatgccggatcagcaaggatggctatcttatataaaat |
2293169 |
T |
|
| Q |
210 |
ttgagcttagatataatgagattgaacgtgcgagagggattttcgagagatttgttttgtgtcatcctagggttggtgcttggattcgttatgcaaagtt |
309 |
Q |
| |
|
||||||| |||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||| |
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|
| T |
2293168 |
ttgagctgagatataatgagattgaacgagctagagggattttcgagagatttgtattgtgtcatcctagggttggtgcttggatacgttatgcgaagtt |
2293069 |
T |
|
| Q |
310 |
tgagatgaagaatggcgaggttcctaaggcgaggattgtttatgaaagagcggtgg---agctagcggatgatgaggaagcagagctgctttttgtggcg |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||| |
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|
| T |
2293068 |
tgagatgaagaatggcgaggttcctaaggcgaggaatgtttatgaaagagcggtggagaagcttgcggatgatgaggaagctgagctgctttttgtggct |
2292969 |
T |
|
| Q |
407 |
tttgcggagtttgaggaaaggtgtaaggaggcagggcgtgcgaggtgtatttataaatttgcacttgatcatattccgaaggggagggctgaggttttgt |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
2292968 |
tttgcggagtttgaggaaaggtgtaaggaggctgagcgggcgaggtgtatttataaatttgcacttgatcatattccgaaggggagggctgaggatttgt |
2292869 |
T |
|
| Q |
507 |
atcggaagtttgtagcatttgagaaacagaatggtgatagggaagggattgaggatgctattgttgggaagagaaggtttcagtatgaagatgaagttat |
606 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
2292868 |
atcggaagtttgtggcatttgagaaacagtatggtgatagggaagggattgaggatgctattgttgggaagagaaggtttcagtatgaagatgaagtgag |
2292769 |
T |
|
| Q |
607 |
gaaaaatccattgaattatgattcgtggtttgattatataagat |
650 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
2292768 |
gaaaaatccgttgaattatgattcatggtttgattatataagat |
2292725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 152; Significance: 4e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 416 - 651
Target Start/End: Complemental strand, 2598110 - 2597876
Alignment:
| Q |
416 |
tttgaggaaaggtgtaaggaggcagggcgtgcgaggtgtatttataaatttgcacttgatcatattccgaaggggagggctgaggttttgtatcggaagt |
515 |
Q |
| |
|
|||| |||||||||||| ||||||| | |||||| |||||||||||||||| || ||||| |||||||||||||||||||||||| ||||||| |||| | |
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|
| T |
2598110 |
tttgtggaaaggtgtaatgaggcagagtgtgcgatgtgtatttataaatttccaattgattatattccgaaggggagggctgaggatttgtatgggaaat |
2598011 |
T |
|
| Q |
516 |
ttgtagcatttgagaaacagaatggtgatagggaagggattgaggatgctattgttgggaagagaaggtttcagtatgaagatgaagttatgaaaaatcc |
615 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||| |
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|
| T |
2598010 |
ttgtggcatttgagaaacagtatggtgatagggaagggattgaggatgctattgttgggaagagaaggtttcaatatgaagatgaagtgaggaaaaatct |
2597911 |
T |
|
| Q |
616 |
attgaattatgattcgtggtttgattatataagatg |
651 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |
|
|
| T |
2597910 |
gttgaattatgatt-atggtttgattatataagatg |
2597876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 10 - 367
Target Start/End: Complemental strand, 33636021 - 33635664
Alignment:
| Q |
10 |
tgagatgaagaataagtttattaatcatgctcggaatgtttgggaacgcgcggttactcttttgccgcgggttgatcagttgtggtataagtatattcat |
109 |
Q |
| |
|
|||||||||||||| || | |||||||| ||||||||| || ||||| |||| |||||| |||||||| |||| ||||||||| |||| || ||| |
|
|
| T |
33636021 |
tgagatgaagaatagattcgtcaatcatgcaaggaatgtttacgatcgcgctgttattcttttaccgcgggtccatcaattgtggtatgagtacatacat |
33635922 |
T |
|
| Q |
110 |
atggaggagatgcttggcaatgttgcgggggcgaggctggttttcgagagatggatgaagtggatgccggatcagcaaggatggttatcttatataaaat |
209 |
Q |
| |
|
|||||| |||| ||||||||||| || || | || |||||||||||| |||||| | |||||||| |||||||| | |||| | ||||| ||||||| |
|
|
| T |
33635921 |
atggagaagattcttggcaatgtcgccggagttagagaggttttcgagaggtggatggaatggatgcctgatcagcatgcatggctctcttacataaaat |
33635822 |
T |
|
| Q |
210 |
ttgagcttagatataatgagattgaacgtgcgagagggattttcgagagatttgttttgtgtcatcctagggttggtgcttggattcgttatgcaaagtt |
309 |
Q |
| |
|
||| || | || ||||| || ||||| ||||| ||||||||| |||||| ||||||||||| |||||||||||| | |||||||| || || |
|
|
| T |
33635821 |
atgaactaaagtacaatgaaatcgaacgacttagaggaattttcgagctttttgttacatgtcatcctagtgttggtgcttggttacgttatgcgaaatt |
33635722 |
T |
|
| Q |
310 |
tgagatgaagaatggcgaggttcctaaggcgaggattgtttatgaaagagcggtggag |
367 |
Q |
| |
|
||||||||||||||| || ||||||| ||| || | ||||||||||||||| |||||| |
|
|
| T |
33635721 |
tgagatgaagaatggtgaagttcctagggcaagaagtgtttatgaaagagctgtggag |
33635664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 549 - 646
Target Start/End: Original strand, 24602074 - 24602171
Alignment:
| Q |
549 |
aagggattgaggatgctattgttgggaagagaaggtttcagtatgaagatgaagttatgaaaaatccattgaattatgattcgtggtttgattatata |
646 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||||||||||| ||||||||| | || ||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
24602074 |
aagggattaaagatgctattgttgggaagagaaggtttcagtccaaagatgaagcgaggataaatcgcttgaattatgattcttggtttgattatata |
24602171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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