View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2817_low_4 (Length: 593)
Name: NF2817_low_4
Description: NF2817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2817_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 465; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 13 - 577
Target Start/End: Complemental strand, 2564676 - 2564120
Alignment:
| Q |
13 |
gacatcatcatgggattgttacctagtatgtagtccacctatgttatgtacacattcaatttttagttataataattatgaaccaaaataataaagaaat |
112 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2564676 |
gacatcttcatgggattgttacctagtatgtagtccacctatgttatgtacacattcaatttttagttataataattatgaaccaaaataataaagaaat |
2564577 |
T |
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| Q |
113 |
gggcttaatgtctta-gagtcataaattagtgtacaaaatacctgtgattttgcaaaggctttaatttcagaggaggtgaaattggtagagccacaatga |
211 |
Q |
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| T |
2564576 |
gggctaaatgtcttaagagtcataaattagtgtacaaaatacctgtgattttgcaaaggctttaatttcagaggaggtgaaattggtagagccacaatga |
2564477 |
T |
|
| Q |
212 |
attccatcaatatgatttttgtttaggattttggagaaaatgaatagtaccatggttgaggtcgtggtgtattgcaaattattactatctctagtataca |
311 |
Q |
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| T |
2564476 |
attccatcaatattatttttgtttaggattttggagaaaatgaatagtaccatggttgaggtcgtggtgtattgcaaattattactatctctagtataca |
2564377 |
T |
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| Q |
312 |
aaagtccacctgagttaataataaatcaaatgctaattcagctcattccatcaataatgaattaatgttgattgaaataagattgacctataagtaaata |
411 |
Q |
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| T |
2564376 |
aaagtccacctgagttaataa------------taattcagctcattccatcaataatgaattaatgttgattgaaataagattgacctataagtaaata |
2564289 |
T |
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| Q |
412 |
tataccaggagnnnnnnnaatctgtagagagtaacttcctggcatcaaagcacatataaatgattcaccatcactatgaatctttgctaagtccttcttc |
511 |
Q |
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| T |
2564288 |
tataccaggtgtttttttaatctgtagagagtaacttccttgcatcaaagcacatataaatgattcaccatcactatgaatctttgctaagtccttcttc |
2564189 |
T |
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| Q |
512 |
ccaccatagaattcctagtaaaattattgagttaattctttctttgga---actaatgtttagtaaaag |
577 |
Q |
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| T |
2564188 |
ccaccatagaattcctagtaaaattattgagttaattctttctttggaactactaatgtttagtaaaag |
2564120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 150 - 337
Target Start/End: Complemental strand, 2574433 - 2574246
Alignment:
| Q |
150 |
atacctgtgattttgcaaaggctttaatttcagaggaggtgaaattggtagagccacaatgaattccatcaatatgatttttgtttaggattttggagaa |
249 |
Q |
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|||||||| |||||||||||||| |||| ||||||| | |||| || ||||||||| || |||||||||||||| |||||||||| |||||||||||| |
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| T |
2574433 |
atacctgtaattttgcaaaggctctaatctcagagggtgaaaaatgggcagagccacagtgtattccatcaatatggtttttgtttaagattttggagaa |
2574334 |
T |
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| Q |
250 |
aatgaatagtaccatggttgaggtcgtggtgtattgcaaattattactatctctagtatacaaaagtccacctgagttaataataaat |
337 |
Q |
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| T |
2574333 |
aatgaatagtaccatggttgaggttgtggtatattgcaaattactgctatctctaatatacagaagcccacctgagttaacaataaat |
2574246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 13 - 79
Target Start/End: Complemental strand, 2574570 - 2574502
Alignment:
| Q |
13 |
gacatcatcatgggattgttacctagtatgtagtccacctatgt--tatgtacacattcaatttttagt |
79 |
Q |
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| T |
2574570 |
gacatcttcatgggattgtttcctagtatgtagtccacctatgtaatatgtacacattcaacttttagt |
2574502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 434 - 527
Target Start/End: Complemental strand, 2574148 - 2574055
Alignment:
| Q |
434 |
tgtagagagtaacttcctggcatcaaagcacatataaatgattcaccatcactatgaatctttgctaagtccttcttcccaccatagaattcct |
527 |
Q |
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||||||||| ||||||||||||||| |||||||||||||||||| ||||| | |||| ||| ||||| || | | |||| ||||| ||||||| |
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| T |
2574148 |
tgtagagagctacttcctggcatcaatgcacatataaatgattcagcatcagtctgaaacttggctaactcttccctcccgccataaaattcct |
2574055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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