View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2817_low_5 (Length: 517)
Name: NF2817_low_5
Description: NF2817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2817_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 395; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 1 - 500
Target Start/End: Complemental strand, 35686005 - 35685512
Alignment:
| Q |
1 |
atgaacacaccaaaccatttgctcctctgccaatagccttgattggaacatacttcatatcaacctcaaacaatatttttgatattgaataataatgctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35686005 |
atgaacacaccaaaccatttgctcctctgccaatagccttgattggaacatacttcatatcaacctcaaacaatatttttgatattgaataataatgctt |
35685906 |
T |
|
| Q |
101 |
tccctttggcttaactttgtaaggaggttcaactaatttttccatttgacctg-aaattagcatcaccacaaggtgttaagcaaaattaacacttacttg |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35685905 |
tccctttggcttaactttgtaaggaggttcaactaattttgccatttgacctgcaaattagcatcaccacaaggtgttaagcaaaattaacacttacttg |
35685806 |
T |
|
| Q |
200 |
aatgcataaaagtgaattattgaaacctta-attgccatgtaagagaaggttggaatcaattcttagttcttatttccaaatctagattttaatcttttg |
298 |
Q |
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|||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35685805 |
aatgcataaaagtgaattattgaaactttatattgccatgtaagagaaggttggaatcaattcttagttcttatttccaaatctagattttaatcttttg |
35685706 |
T |
|
| Q |
299 |
atgtcactttatctctttattaagcttatgctctctcaacccattattttgggtaagcctttttattaaaatattcnnnnnnnnnnnnnnnnngtcattt |
398 |
Q |
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|||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
35685705 |
atgtcactttgtccctttattaagcttatgctctcttaacccattattttgggtaagcctttttattaaaatattcaaaaaaaaaa--------tcattt |
35685614 |
T |
|
| Q |
399 |
ttatctttcatactccctgaacttagcttcaaaaacactccaacaacaaagaaaccaaatcagaaagattgtaaaagagttataataaaaaagcatttat |
498 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| || |
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| T |
35685613 |
ttatctttcatactccctgaacttagcttcaaaaacactccaacaacaaagaaaccaaatcagaatgattgtaaaagagtaataataaaaaagcattcat |
35685514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 35680744 - 35680420
Alignment:
| Q |
1 |
atgaacacaccaaaccatttgctcctctgccaatagccttgattggaacatacttcatatcaacctcaaacaatatttttgatattgaataataatgctt |
100 |
Q |
| |
|
|||| ||||||| ||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
35680744 |
atgagcacaccacaccatatgttcctctgccaatagccttaattggaacatacttcatatcaacctcaaacaatgtttttgatattctataataatgctt |
35680645 |
T |
|
| Q |
101 |
tccctttggcttaactttgtaaggaggttcaactaatttttcca-tttgacctg-aaattagca--------tcaccacaaggtgttaagcaaaattaac |
190 |
Q |
| |
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|||||||||||||| | ||||||| ||||||||||| || ||| ||| |||| ||||||||| ||||||||| | ||||||||||||||| |
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| T |
35680644 |
tccctttggcttaattctgtaagggggttcaactaacgttgccatttttccctgcaaattagcatcaccagttcaccacaatatattaagcaaaattaac |
35680545 |
T |
|
| Q |
191 |
acttacttgaatgcataaaagtgaattattgaaacctta-attgccatgtaagagaaggttggaatcaattcttagttcttatttccaaatctagatttt |
289 |
Q |
| |
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||| ||| ||||||||| |||||||||| || ||| |||||||| ||| ||||||||||||||||||||||||| |||||| |||||||| |||| |
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| T |
35680544 |
actctattggatgcataaagatgaattattggtactttatattgccatataa-agaaggttggaatcaattcttagttgctatttctaaatctaggtttt |
35680446 |
T |
|
| Q |
290 |
aatcttttgatgtcactttatctctt |
315 |
Q |
| |
|
||||||||||||||||||| |||||| |
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|
| T |
35680445 |
aatcttttgatgtcactttgtctctt |
35680420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 239 - 288
Target Start/End: Complemental strand, 33203351 - 33203302
Alignment:
| Q |
239 |
taagagaaggttggaatcaattcttagttcttatttccaaatctagattt |
288 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||| ||||||| |||| |
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|
| T |
33203351 |
taagagagggttggaatcaattcttagttcttatttctaaatctacattt |
33203302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 239 - 280
Target Start/End: Complemental strand, 2341797 - 2341756
Alignment:
| Q |
239 |
taagagaaggttggaatcaattcttagttcttatttccaaat |
280 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||| |||| |
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|
| T |
2341797 |
taagagagggttggaatcaattcttagttcttatttctaaat |
2341756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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