View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2817_low_6 (Length: 259)
Name: NF2817_low_6
Description: NF2817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2817_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 10698431 - 10698184
Alignment:
| Q |
1 |
ggtttcctccaaattagatacccagaaaatcctaccccatttcaaatccatccaaagataacgttagtgtctattgctagttttctcctatattgtatgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
10698431 |
ggtttcctccaaattagatacccagaaaatcctaccccatttcaaatccatccaaagataacgttagtgtctattgctagttttctcctatattgtttgg |
10698332 |
T |
|
| Q |
101 |
ccttttggattaagcttaagtttacaacaagggttgataccctcatggaagtgtttggttccctttcaataatttctttggtgttgatgttctttccaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10698331 |
ccttttggattaagcttaagtttacaacaagggttgataccctcatggaagtgtttggttccctttcaataatttctttggtgttgatgttctttccaga |
10698232 |
T |
|
| Q |
201 |
aaattgtggactatttggatacattacaatatacacattatggttcat |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10698231 |
aaattgtggactatttggatacattacaatatacacattatggttcat |
10698184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 10690498 - 10690251
Alignment:
| Q |
1 |
ggtttcctccaaattagatacccagaaaatcctaccccatttcaaatccatccaaagataacgttagtgtctattgctagttttctcctatattgtatgg |
100 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||| |||||| |||||||||||| |||||| || ||||||||||| ||||| |||||||| ||| |
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| T |
10690498 |
ggtttcctccaagttagatatccagaaaatcctaccccttttcaagtccatccaaagacaacgttggtatctattgctagctttctactatattgcttgg |
10690399 |
T |
|
| Q |
101 |
ccttttggattaagcttaagtttacaacaagggttgataccctcatggaagtgtttggttccctttcaataatttctttggtgttgatgttctttccaga |
200 |
Q |
| |
|
|||| |||||||||||||||| | ||||||||||||||| | |||||||||||||||| |||||| ||||||| |||||||||||||| | ||||| |
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| T |
10690398 |
ccttcatgattaagcttaagtttgctacaagggttgataccttgttggaagtgtttggttcactttcattaatttcattggtgttgatgttgctcccaga |
10690299 |
T |
|
| Q |
201 |
aaattgtggactatttggatacattacaatatacacattatggttcat |
248 |
Q |
| |
|
|||||| ||| |||||||||| |||| ||||||||| |||||||||| |
|
|
| T |
10690298 |
aaattggggattatttggatatattatcatatacacaatatggttcat |
10690251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 3 - 248
Target Start/End: Complemental strand, 10707638 - 10707393
Alignment:
| Q |
3 |
tttcctccaaattagatacccagaaaatcctaccccatttcaaatccatccaaagataacgttagtgtctattgctagttttctcctatattgtatggcc |
102 |
Q |
| |
|
|||||||||||||| || ||||| ||||| || ||||||||||||||||||| | || | || | ||| ||||||| ||||| ||||||||| | ||| |
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|
| T |
10707638 |
tttcctccaaattacttatccagataatcccactgcatttcaaatccatccaaaaacaatgataatctctgttgctagctttctactatattgttttgcc |
10707539 |
T |
|
| Q |
103 |
ttttggattaagcttaagtttacaacaagggttgataccctcatggaagtgtttggttccctttcaataatttctttggtgttgatgttctttccagaaa |
202 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
10707538 |
ttttggattaagcttatgtttgcaacaagggttgataccctcatggaagtgtttggttccctttcaatagtttctttggtgttgatgttctttccagaaa |
10707439 |
T |
|
| Q |
203 |
attgtggactatttggatacattacaatatacacattatggttcat |
248 |
Q |
| |
|
|||| | | | |||||||| ||| ||||| ||| |||||||||| |
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|
| T |
10707438 |
attgggaaacacttggatactttatcatatatacaatatggttcat |
10707393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 10693844 - 10693597
Alignment:
| Q |
1 |
ggtttcctccaaattagatacccagaaaatcctaccccatttcaaatccatccaaagataacgttagtgtctattgctagttttctcctatattgtatgg |
100 |
Q |
| |
|
|||||||||||||| || || ||||| || || | ||||||||||||||||||||| || | || | ||| ||||||| ||||| |||||| | | |
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|
| T |
10693844 |
ggtttcctccaaatcagttatccagataaacccagtgcatttcaaatccatccaaagacaatgatactctctgttgctagctttctaatatattcctttg |
10693745 |
T |
|
| Q |
101 |
ccttttggattaagcttaagtttacaacaagggttgataccctcatggaagtgtttggttccctttcaataatttctttggtgttgatgttctttccaga |
200 |
Q |
| |
|
|||||||||||||||| |||||| |||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||| | |
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|
| T |
10693744 |
ccttttggattaagctcaagtttgcaactagggttgataccttcatggaagtgtttggttccctttcaatagtttctttggtgatgatgttcttcccaca |
10693645 |
T |
|
| Q |
201 |
aaattgtggactatttggatacattacaatatacacattatggttcat |
248 |
Q |
| |
|
||||| ||| ||| ||||||||||| ||||||||| |||||||||| |
|
|
| T |
10693644 |
caattggggaatatgtggatacattatcatatacacaatatggttcat |
10693597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 10657721 - 10657474
Alignment:
| Q |
1 |
ggtttcctccaaattagatacccagaaaatcctaccccatttcaaatccatccaaagataacgttagtgtctattgctagttttctcctatattgtatgg |
100 |
Q |
| |
|
|||||||| |||||||| || ||| | ||||| || |||||||| ||||||||||| || | || | ||| | ||||| ||||| |||||||| | | |
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|
| T |
10657721 |
ggtttccttcaaattagttatccaaataatcccactgcatttcaagcccatccaaagacaatgctactctctgtagctagctttctactatattgctttg |
10657622 |
T |
|
| Q |
101 |
ccttttggattaagcttaagtttacaacaagggttgataccctcatggaagtgtttggttccctttcaataatttctttggtgttgatgttctttccaga |
200 |
Q |
| |
|
||||||||||||||||||||||| | | ||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| | ||| | |
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|
| T |
10657621 |
ccttttggattaagcttaagtttgctataagacttgataccctcatggaagcgtttggttcactttcaataatttctttggtgttgatgttcatcccaaa |
10657522 |
T |
|
| Q |
201 |
aaattgtggactatttggatacattacaatatacacattatggttcat |
248 |
Q |
| |
|
|| || ||| |||||||||||||||| || ||||||||||||||||| |
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|
| T |
10657521 |
caaatggggattatttggatacattaccatttacacattatggttcat |
10657474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 10634146 - 10633884
Alignment:
| Q |
1 |
ggtttcctccaaattagatacccagaaaatcctaccccatttcaaatccatccaaagataacgttagtgtctattgctagttttctcctatattgtatgg |
100 |
Q |
| |
|
||||||||||||||| |||| ||||||||||| ||| | ||| || |||||||||||| || ||| || ||||| ||||||||| | |||||||| ||| |
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|
| T |
10634146 |
ggtttcctccaaattcgatatccagaaaatccaacctcgtttgaagtccatccaaagacaatgtttgtctctatggctagttttttactatattgcttgg |
10634047 |
T |
|
| Q |
101 |
ccttttggattaagcttaagtttacaacaaggg---------------ttgataccctcatggaagtgtttggttccctttcaataatttctttggtgtt |
185 |
Q |
| |
|
|||||||||||||| |||||||| | || |||| ||||||| ||| | || |||||||||| || |||||||||||||||||| | |
|
|
| T |
10634046 |
ccttttggattaagattaagtttgctactagggtttttgaagggaaaattgatacactccttcaaatgtttggttcgctctcaataatttctttggtgat |
10633947 |
T |
|
| Q |
186 |
gatgttctttccagaaaattgtggactatttggatacattacaatatacacattatggttcat |
248 |
Q |
| |
|
|||||||||||| ||| ||| ||| || ||||||||||| ||||||||| ||||||||| |
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|
| T |
10633946 |
gatgttctttcctaaaagttggggagtagttggatacattgtcatatacacaacatggttcat |
10633884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 40 - 248
Target Start/End: Original strand, 15240374 - 15240585
Alignment:
| Q |
40 |
tttcaaatccatccaaagataacgttagtgtctattgctagttttctcctatattgtatggccttttggattaagcttaagttt---acaacaagggttg |
136 |
Q |
| |
|
|||||| |||||||||||| || |||||| ||||||||||| ||||| ||||||| | | || |||||| |||| ||||| ||| ||||||||| ||| |
|
|
| T |
15240374 |
tttcaactccatccaaagacaatgttagtctctattgctagctttctactatattctttagcattttgggttaaacttaaatttgatacaacaaggattg |
15240473 |
T |
|
| Q |
137 |
ataccctcatggaagtgtttggttccctttcaataatttctttggtgttgatgttctttccagaaaattgtggactatttggatacattacaatatacac |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| | ||||| ||| ||||||||||||||| |||||||| |
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|
| T |
15240474 |
ataccctcatggaagtgtttggttccctttcaataatttctttggttttgatgttcttcccacacaattggggattatttggatacattatcatatacac |
15240573 |
T |
|
| Q |
237 |
attatggttcat |
248 |
Q |
| |
|
|||||||||||| |
|
|
| T |
15240574 |
attatggttcat |
15240585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 50 - 226
Target Start/End: Original strand, 15246718 - 15246894
Alignment:
| Q |
50 |
atccaaagataacgttagtgtctattgctagttttctcctatattgtatggccttttggattaagcttaagtttacaacaagggttgataccctcatgga |
149 |
Q |
| |
|
||||||||| || |||||| ||||||||||| ||||| ||||||||| |||| ||| || |||| ||||| ||| | | |||| |||||||||| | ||| |
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|
| T |
15246718 |
atccaaagacaatgttagtctctattgctagctttctactatattgtttggcttttagggttaaacttaaatttgccagaaggcttgatacccttaagga |
15246817 |
T |
|
| Q |
150 |
agtgtttggttccctttcaataatttctttggtgttgatgttctttccagaaaattgtggactatttggatacatta |
226 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||| ||| | ||||| ||| ||| ||||||||||| |
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|
| T |
15246818 |
agtgtttggttcgctttcaataatttctttggtgttgatgttcttcccaaagaattggggattatctggatacatta |
15246894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 33777314 - 33777564
Alignment:
| Q |
1 |
ggtttcctccaaattagatacccagaaaatcctaccccatttcaaatccatccaaagataacgttagtgtctattgctagttttctcctatattgtatgg |
100 |
Q |
| |
|
|||||||| |||||||| || ||||| ||||| || ||||||| |||||||||||| || ||| || ||||||||||| ||||| ||||||||| ||| |
|
|
| T |
33777314 |
ggtttccttcaaattagttatccagataatcccactgcatttcatgtccatccaaagacaatgtttgtctctattgctagctttctactatattgtttgg |
33777413 |
T |
|
| Q |
101 |
ccttttggattaagcttaagttt---acaacaagggttgataccctcatggaagtgtttggttccctttcaataatttctttggtgttgatgttctttcc |
197 |
Q |
| |
|
||||||||||||| |||||||| |||||||| ||||||| ||||| |||||||||||||| ||||||||| ||||||||||||| |||||| |||| |
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|
| T |
33777414 |
tcttttggattaagattaagtttaccacaacaagaattgatacactcatagaagtgtttggttcactttcaatagtttctttggtgttaatgttccttcc |
33777513 |
T |
|
| Q |
198 |
agaaaattgtggactatttggatacattacaatatacacattatggttcat |
248 |
Q |
| |
|
| | ||||| ||| ||| | |||||||| ||||||||| ||||||||| |
|
|
| T |
33777514 |
aaacaattggggagtatgttcatacattatcatatacacagcatggttcat |
33777564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 33774674 - 33774865
Alignment:
| Q |
1 |
ggtttcctccaaattagatacccagaaaatcctaccccatttcaaatccatccaaagataacgttagtgtctattgctag-ttttctcctatattgtatg |
99 |
Q |
| |
|
|||||||| |||||||| || ||||| ||||| || ||||||| |||||||||||| || ||| || |||||||||| |||||| |||||||| || |
|
|
| T |
33774674 |
ggtttccttcaaattagttatccagataatcccactgcatttcatgtccatccaaagacaatgtttgtcactattgctagcttttctactatattgcttg |
33774773 |
T |
|
| Q |
100 |
gccttttggattaagcttaagtttacaac---aagggttgataccctcatggaagtgtttggttccctttcaataatttctttggtgttgat |
188 |
Q |
| |
|
| ||| |||||||| |||||||||| || ||| ||||||| ||||||||||||||||| || ||||||||| |||||||||||||||| |
|
|
| T |
33774774 |
gtcttctggattaatattaagtttaccacgacaagaattgatacactcatggaagtgtttggctcactttcaatagtttctttggtgttgat |
33774865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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