View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2817_low_7 (Length: 249)

Name: NF2817_low_7
Description: NF2817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2817_low_7
NF2817_low_7
[»] chr2 (19 HSPs)
chr2 (1-240)||(31921621-31921861)
chr2 (1-163)||(8381316-8381481)
chr2 (1-167)||(29194119-29194288)
chr2 (34-171)||(43377242-43377379)
chr2 (1-167)||(2110351-2110520)
chr2 (1-167)||(28585683-28585852)
chr2 (1-167)||(43370805-43370974)
chr2 (35-159)||(16970295-16970419)
chr2 (1-167)||(45080420-45080587)
chr2 (1-132)||(25898749-25898880)
chr2 (2-167)||(1779073-1779241)
chr2 (31-167)||(9370505-9370643)
chr2 (6-167)||(4828094-4828258)
chr2 (31-170)||(42846942-42847079)
chr2 (31-131)||(39646335-39646437)
chr2 (1-104)||(30422588-30422692)
chr2 (106-170)||(39646435-39646498)
chr2 (31-88)||(27922609-27922666)
chr2 (31-73)||(9472539-9472581)
[»] chr3 (10 HSPs)
chr3 (1-240)||(30462728-30462967)
chr3 (1-167)||(40496904-40497073)
chr3 (1-167)||(50676605-50676773)
chr3 (1-167)||(41346178-41346347)
chr3 (1-167)||(51545793-51545962)
chr3 (1-167)||(48169855-48170024)
chr3 (1-167)||(54014368-54014537)
chr3 (31-167)||(24709141-24709279)
chr3 (31-167)||(48737657-48737795)
chr3 (1-163)||(13542792-13542957)
[»] chr5 (8 HSPs)
chr5 (1-240)||(36767876-36768114)
chr5 (15-240)||(33404289-33404515)
chr5 (1-167)||(42897374-42897543)
chr5 (31-167)||(2970697-2970834)
chr5 (1-167)||(36982317-36982486)
chr5 (1-167)||(14044187-14044355)
chr5 (1-115)||(5712601-5712716)
chr5 (31-62)||(36006844-36006875)
[»] chr7 (17 HSPs)
chr7 (1-240)||(22338028-22338268)
chr7 (10-240)||(22619810-22620041)
chr7 (1-167)||(4041078-4041247)
chr7 (1-167)||(40232115-40232284)
chr7 (1-167)||(25943649-25943816)
chr7 (1-167)||(6392402-6392571)
chr7 (1-167)||(27596086-27596255)
chr7 (12-167)||(29737536-29737694)
chr7 (9-167)||(31689361-31689522)
chr7 (34-170)||(21442834-21442970)
chr7 (1-167)||(41427648-41427817)
chr7 (43-167)||(38276588-38276714)
chr7 (62-170)||(48838188-48838296)
chr7 (31-167)||(24300185-24300313)
chr7 (1-57)||(7380535-7380592)
chr7 (36-80)||(1643271-1643315)
chr7 (35-79)||(2849366-2849410)
[»] chr8 (12 HSPs)
chr8 (1-194)||(11147755-11147949)
chr8 (1-170)||(9753898-9754069)
chr8 (1-167)||(39907039-39907208)
chr8 (1-167)||(18575159-18575328)
chr8 (31-170)||(13243578-13243718)
chr8 (1-167)||(11254631-11254800)
chr8 (1-167)||(17493657-17493826)
chr8 (31-167)||(12738397-12738535)
chr8 (1-163)||(27820908-27821073)
chr8 (4-167)||(38069898-38070064)
chr8 (31-167)||(17336002-17336139)
chr8 (34-79)||(29638412-29638457)
[»] chr4 (24 HSPs)
chr4 (2-240)||(28689666-28689910)
chr4 (1-170)||(3172020-3172191)
chr4 (37-170)||(28910195-28910328)
chr4 (1-167)||(39788124-39788293)
chr4 (1-167)||(47199617-47199786)
chr4 (1-167)||(40071449-40071618)
chr4 (1-167)||(54438157-54438326)
chr4 (4-167)||(33800786-33800952)
chr4 (1-167)||(20789804-20789972)
chr4 (1-167)||(925136-925305)
chr4 (1-167)||(17493884-17494053)
chr4 (1-167)||(37064753-37064922)
chr4 (31-167)||(32217968-32218106)
chr4 (31-170)||(46870735-46870874)
chr4 (31-167)||(21240457-21240595)
chr4 (35-170)||(41555590-41555720)
chr4 (1-167)||(34408657-34408826)
chr4 (1-115)||(10441518-10441631)
chr4 (31-167)||(52101179-52101317)
chr4 (31-163)||(53509673-53509807)
chr4 (1-138)||(51744519-51744659)
chr4 (36-79)||(48400584-48400627)
chr4 (36-73)||(39052854-39052891)
chr4 (35-79)||(29550679-29550723)
[»] chr1 (17 HSPs)
chr1 (1-170)||(40562436-40562606)
chr1 (4-167)||(39150900-39151066)
chr1 (1-167)||(50777128-50777297)
chr1 (1-167)||(46862687-46862856)
chr1 (5-167)||(46371057-46371217)
chr1 (1-170)||(9129401-9129574)
chr1 (1-167)||(28036700-28036870)
chr1 (1-167)||(32045964-32046133)
chr1 (35-167)||(38321776-38321910)
chr1 (3-167)||(8229194-8229362)
chr1 (1-167)||(1207452-1207621)
chr1 (1-167)||(1929217-1929385)
chr1 (83-170)||(38817902-38817988)
chr1 (36-79)||(43895957-43896000)
chr1 (31-79)||(9590625-9590673)
chr1 (31-79)||(31634244-31634292)
chr1 (31-79)||(36326154-36326202)
[»] scaffold0047 (1 HSPs)
scaffold0047 (1-167)||(69884-70053)
[»] scaffold0061 (1 HSPs)
scaffold0061 (1-167)||(10017-10186)
[»] chr6 (13 HSPs)
chr6 (10-167)||(29182722-29182882)
chr6 (37-167)||(30736550-30736682)
chr6 (1-167)||(12350403-12350572)
chr6 (1-167)||(28541587-28541756)
chr6 (1-167)||(16435910-16436075)
chr6 (31-170)||(1870662-1870800)
chr6 (31-167)||(7271109-7271247)
chr6 (31-170)||(13210472-13210610)
chr6 (3-167)||(13042103-13042268)
chr6 (1-167)||(1241240-1241408)
chr6 (31-167)||(31013526-31013664)
chr6 (31-163)||(31833622-31833751)
chr6 (34-141)||(17510202-17510309)
[»] scaffold0016 (1 HSPs)
scaffold0016 (1-167)||(92169-92338)
[»] scaffold0519 (1 HSPs)
scaffold0519 (1-167)||(10593-10762)
[»] scaffold0532 (1 HSPs)
scaffold0532 (1-167)||(3945-4114)
[»] scaffold1194 (1 HSPs)
scaffold1194 (31-141)||(1127-1236)
[»] scaffold0318 (2 HSPs)
scaffold0318 (4-82)||(16562-16641)
scaffold0318 (122-167)||(16488-16533)
[»] scaffold0685 (1 HSPs)
scaffold0685 (35-80)||(6352-6397)
[»] scaffold0250 (1 HSPs)
scaffold0250 (34-79)||(20566-20611)


Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 31921621 - 31921861
Alignment:
Q  1 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 99  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  31921621 tactccctccgtccctgaataagtgatctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatatttttactaaattg 31921720  T
Q  100 tccttattattatttttaaaccttcacttttaaataatgattactttctttgttccactacaaacttttactgcaaccaattaataaactttgctctaca 199  Q
     ||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||| |||||||| |||||||| ||||||||||||||||||    
T  31921721 cccttattattatttttaaaccttcacttttaaataataattactttaattgttccactacaagcttttactacaaccaatgaataaactttgctctaca 31921820  T
Q  200 tgccaaagctacgtaactatcagataccaatatgcctatgc 240  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  31921821 tgccaaagctacgtagctatcagataccaatatgcctatgc 31921861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 8381316 - 8381481
Alignment:
Q  1 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 99  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||    
T  8381316 tactccctccgtccctgaataagtgatctatttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaatagagtgatacttttactgagttg 8381415  T
Q  100 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaa 163  Q
     |||| | |||||||| ||||   |||| |||||| ||||||||||||||||||||||||||||||    
T  8381416 cccttgtcattattttgaaactttttcatttttaagtaatgattactttctttgttccactacaaa 8381481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 29194288 - 29194119
Alignment:
Q  1 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 99  Q
    ||||||||||||||||||||||||||  |||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||| |||    
T  29194288 tactccctccgtccctgaataagtgacctatttgaccatttcacacaaattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttg 29194189  T
Q  100 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 167  Q
     |||| | |||||||| ||||   ||||||||||| ||||||||| ||||||||||||||||||||||||    
T  29194188 cccttgtcattattttgaaactttttcacttttaagtaatgattattttctttgttccactacaaacttt 29194119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 34 - 171
Target Start/End: Original strand, 43377242 - 43377379
Alignment:
Q  34 accatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgtccttattattatttttaaaccttcacttttaaa 133  Q
    ||||||||| ||| |||||||||| ||||||||||||||||||| | ||||| |||||||||||||| ||| |||||||||| ||||||||||||||||     
T  43377242 accatttcaaacaaattaagaaaagtgtaaagatgaaagaaagaaaatgatacttttactgaattgtacttgttattattttgaaaccttcacttttaag 43377341  T
Q  134 taatgattactttctttgttccactacaaacttttact 171  Q
    ||||||||||||||||||||||||||||||||||||||    
T  43377342 taatgattactttctttgttccactacaaacttttact 43377379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 2110520 - 2110351
Alignment:
Q  1 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 99  Q
    |||||| |||||||||||||||||||  |||| || |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||    
T  2110520 tactccttccgtccctgaataagtgacatatttgatcatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttg 2110421  T
Q  100 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 167  Q
     |||| | |||||||| ||||   ||||||||||| ||||||||||||| ||||||||||||||||||||    
T  2110420 cccttgtcattattttgaaactttttcacttttaagtaatgattactttttttgttccactacaaacttt 2110351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 28585683 - 28585852
Alignment:
Q  1 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 99  Q
    |||||| ||||||||| |||||||||  |||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||| |||    
T  28585683 tactccatccgtcccttaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagataaaagaaagagagtgatacttttactgagttg 28585782  T
Q  100 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 167  Q
     |||| | |||||||| ||||   ||||||||||| ||||||||||||||||||||||||||||||||||    
T  28585783 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaacttt 28585852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 43370974 - 43370805
Alignment:
Q  1 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 99  Q
    |||||||||||||||| |||||||||  |||| ||||||||||||||||||||||||| |||||| || ||||||||||||||||| ||||||||| |||    
T  43370974 tactccctccgtcccttaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaaaataaaagaaagagagtgatacttttactgagttg 43370875  T
Q  100 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 167  Q
     |||| | |||||||| ||||   ||||||||||| ||||||||||||||||||||||||||||||||||    
T  43370874 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaacttt 43370805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 35 - 159
Target Start/End: Complemental strand, 16970419 - 16970295
Alignment:
Q  35 ccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgtccttattattatttttaaaccttcacttttaaat 134  Q
    |||||||||||| |||||||||| ||||||||| ||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||| |    
T  16970419 ccatttcacacatattaagaaaagtgtaaagataaaagaaagataatgatatttttactgaattgcccttattattatttttaaaccttcacttttaagt 16970320  T
Q  135 aatgattactttctttgttccacta 159  Q
    ||||||||||||||||||| |||||    
T  16970319 aatgattactttctttgtttcacta 16970295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 45080420 - 45080587
Alignment:
Q  1 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 99  Q
    ||||||||||||||||||||||||||  |||| ||||||||||||||||||||||||| ||||||||||||||||  ||||||||| ||||||||| |||    
T  45080420 tactccctccgtccctgaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaa--agagtgatacttttactgagttg 45080517  T
Q  100 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 167  Q
     |||||| ||||| || ||||   ||||||||||| ||||||||| ||||||||||||||||||||||||    
T  45080518 cccttatcattatgttgaaactttttcacttttaagtaatgattattttctttgttccactacaaacttt 45080587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 25898880 - 25898749
Alignment:
Q  1 tactccctccgtccctgaataagtgatttattgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgt 100  Q
    |||||||||||| ||||||||||||| |  ||||||||||||||||||||||||| | ||||||||||||||||| | |||||||||||||||||||||     
T  25898880 tactccctccgttcctgaataagtgactacttgaccatttcacacagattaagaagagtgtaaagatgaaagaaaaaaagtgatatttttactgaattgc 25898781  T
Q  101 ccttattattatttttaaaccttcacttttaa 132  Q
    ||||||||||||||||||| |||| |||||||    
T  25898780 ccttattattatttttaaatcttcgcttttaa 25898749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 2 - 167
Target Start/End: Original strand, 1779073 - 1779241
Alignment:
Q  2 actccctccgtccctgaataagtgattta-ttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgt 100  Q
    ||||| ||||||||| ||||  ||| ||| |||||||||||||| |||||||||||| ||||||||||||||||||| | ||||||||||||||||||||    
T  1779073 actccttccgtccctcaatacttgacttacttgaccatttcacatagattaagaaaagtgtaaagatgaaagaaagataatgatatttttactgaattgt 1779172  T
Q  101 ccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 167  Q
    | || | |||||||| ||||   ||||||||||| ||||||||||||||||| ||||||||||||||||    
T  1779173 ctttgtcattattttgaaactttttcacttttaagtaatgattactttctttattccactacaaacttt 1779241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 31 - 167
Target Start/End: Complemental strand, 9370643 - 9370505
Alignment:
Q  31 ttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgtccttattattatttttaaac--cttcactt 128  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||| | |||| ||||||||||||||||||| | |||||||| ||||   |||||||    
T  9370643 ttgaccatttcacacagattaagaaaagtgtaaagatgaaaaaaagaaaatgatttttttactgaattgtccttgtcattattttgaaactttttcactt 9370544  T
Q  129 ttaaataatgattactttctttgttccactacaaacttt 167  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  9370543 ttaagtaatgattactttctttgtttcactacaaacttt 9370505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 6 - 167
Target Start/End: Original strand, 4828094 - 4828258
Alignment:
Q  6 cctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgtcctt 104  Q
    ||||||| ||| |||||||||  |||| ||||||||||||||||||||||||| ||||||||| ||||||| ||||||||| ||||||||| ||| ||||    
T  4828094 cctccgttccttaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagataaaagaaaaagagtgatacttttactgagttgccctt 4828193  T
Q  105 attattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 167  Q
     | |||||||| ||||   ||||||||||| |||||||||||||||||||||||||| |||||||    
T  4828194 gtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactataaacttt 4828258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 31 - 170
Target Start/End: Original strand, 42846942 - 42847079
Alignment:
Q  31 ttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgtccttattattatttttaaaccttcactttt 130  Q
    ||||||||||||||||||||| ||||  || ||| ||||||||  |||| ||||||||||||| |||||||||| |||||||||| ||| ||||||||||    
T  42846942 ttgaccatttcacacagattatgaaaggtgcaaaaatgaaaga--gagaatgatatttttactaaattgtccttgttattattttgaaatcttcactttt 42847039  T
Q  131 aaataatgattactttctttgttccactacaaacttttac 170  Q
    || ||||||||| ||||||||||||| |||||||||||||    
T  42847040 aagtaatgattattttctttgttccattacaaacttttac 42847079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 31 - 131
Target Start/End: Original strand, 39646335 - 39646437
Alignment:
Q  31 ttgaccatttcacacagattaagaaaa--atgtaaagatgaaagaaagagagtgatatttttactgaattgtccttattattatttttaaaccttcactt 128  Q
    |||||||||||| ||||||||||||||  ||||||| |||||||||||||| ||||||||||||||||||| |||| |||||||||| ||||||||||||    
T  39646335 ttgaccatttcatacagattaagaaaaaaatgtaaaaatgaaagaaagagaatgatatttttactgaattgcccttgttattattttgaaaccttcactt 39646434  T
Q  129 tta 131  Q
    |||    
T  39646435 tta 39646437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 30422692 - 30422588
Alignment:
Q  1 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 99  Q
    ||||||||||||| ||||||||||||  |||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||| |||    
T  30422692 tactccctccgtcgctgaataagtgacctatttgaccatttcacacagattaagaaaagtgtaacgatgaaagaaagagagtgatacttttactgagttg 30422593  T
Q  100 tcctt 104  Q
     ||||    
T  30422592 ccctt 30422588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 106 - 170
Target Start/End: Original strand, 39646435 - 39646498
Alignment:
Q  106 ttattatttttaaaccttcacttttaaataatgattactttctttgttccactacaaacttttac 170  Q
    |||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  39646435 ttattattttgaaaccttcacttttaagtaatgattacttt-tttgttccactacaaacttttac 39646498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 31 - 88
Target Start/End: Original strand, 27922609 - 27922666
Alignment:
Q  31 ttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatattt 88  Q
    |||| ||||||||||| |||||||||| ||||||||||||||||||||| ||||||||    
T  27922609 ttgatcatttcacacatattaagaaaagtgtaaagatgaaagaaagagaatgatattt 27922666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 73
Target Start/End: Complemental strand, 9472581 - 9472539
Alignment:
Q  31 ttgaccatttcacacagattaagaaaaatgtaaagatgaaaga 73  Q
    |||||||||||||||| ||||||||||||||| | ||||||||    
T  9472581 ttgaccatttcacacatattaagaaaaatgtataaatgaaaga 9472539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 169; Significance: 9e-91; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 30462967 - 30462728
Alignment:
Q  1 tactccctccgtccctgaataagtgattta-ttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 99  Q
    |||||| |||||||| ||||||||||| || ||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||    
T  30462967 tactccatccgtccc-gaataagtgatctacttgaccatttcacacagattaagaaaagtataaagatgaaagaaatagagtgatatttttactgaattg 30462869  T
Q  100 tccttattattatttttaaaccttcacttttaaataatgattactttctttgttccactacaaacttttactgcaaccaattaataaactttgctctaca 199  Q
     ||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  30462868 cccttattattatttttaaaccttcacttttaaataataattactttaattgttccactacaaacttttactgcaaccaatgaataaactttgctctaca 30462769  T
Q  200 tgccaaagctacgtaactatcagataccaatatgcctatgc 240  Q
    || |||||||||||| || | ||||||||||||||||||||    
T  30462768 tggcaaagctacgtagctgttagataccaatatgcctatgc 30462728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 40497073 - 40496904
Alignment:
Q  1 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 99  Q
    |||||||||||||||| |||||||||  |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||    
T  40497073 tactccctccgtcccttaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttg 40496974  T
Q  100 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 167  Q
     |||| | |||||||| ||||   ||||||||||| ||||||||||||||||||||||||||||||||||    
T  40496973 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaacttt 40496904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 50676773 - 50676605
Alignment:
Q  1 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 99  Q
    |||||||||||||||| |||||||||  |||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||    
T  50676773 tactccctccgtcccttaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagataaaagaaagagagtgatatttttactgagttg 50676674  T
Q  100 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 167  Q
     |||| | |||||||| ||||   ||||||||||| ||||||||||||||||||||||||||||||||||    
T  50676673 -ccttgtcattattttaaaactttttcacttttaagtaatgattactttctttgttccactacaaacttt 50676605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 41346347 - 41346178
Alignment:
Q  1 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 99  Q
    ||||||||||||||||||||||||||  |||| ||| ||||||||||||||||||||| ||||||||||||||||||  ||||||| ||||||||| |||    
T  41346347 tactccctccgtccctgaataagtgacatatttgactatttcacacagattaagaaaagtgtaaagatgaaagaaagtaagtgatacttttactgagttg 41346248  T
Q  100 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 167  Q
     |||| | |||||||| ||||   ||||||||||| ||||||||||||||||||||||||||||||||||    
T  41346247 cccttgtcattattttaaaactttttcacttttaagtaatgattactttctttgttccactacaaacttt 41346178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 51545962 - 51545793
Alignment:
Q  1 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 99  Q
    ||||| ||||||||||||||||||||  |||| || |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||    
T  51545962 tactctctccgtccctgaataagtgacctatttgatcatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttg 51545863  T
Q  100 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 167  Q
     |||| | |||||||| ||||   ||||||||||| ||||||||||||| ||||||||||||||||||||    
T  51545862 cccttgtcattattttgaaactttttcacttttaagtaatgattactttttttgttccactacaaacttt 51545793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 48170024 - 48169855
Alignment:
Q  1 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 99  Q
    |||||||||||||||| |||||||||  |||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||| | |||||||  ||    
T  48170024 tactccctccgtcccttaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagataaaagaaagagagtgatactattactgagctg 48169925  T
Q  100 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 167  Q
     |||| | |||||||| ||||   ||||||||||| ||||||||||||||||||||||||||||||||||    
T  48169924 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaacttt 48169855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 54014537 - 54014368
Alignment:
Q  1 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 99  Q
    ||||||||| |||||| ||||||| |  |||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||| |||    
T  54014537 tactccctctgtcccttaataagtaacctatttgaccatttcacacagattaagaaaagtgtaaagataaaagaaagagagtgatacttttactgagttg 54014438  T
Q  100 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 167  Q
     |||||| |||||||| ||||   ||||||||||| |||| |||||||||||||||||||||||||||||    
T  54014437 cccttatcattattttgaaactttttcacttttaagtaataattactttctttgttccactacaaacttt 54014368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 31 - 167
Target Start/End: Complemental strand, 24709279 - 24709141
Alignment:
Q  31 ttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgtccttattattatttttaaa--ccttcactt 128  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||| |||| | |||||||| |||    |||||||    
T  24709279 ttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttgcccttgtcattattttgaaattttttcactt 24709180  T
Q  129 ttaaataatgattactttctttgttccactacaaacttt 167  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  24709179 ttaagtaatgattactttctttgtttcactacaaacttt 24709141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 31 - 167
Target Start/End: Complemental strand, 48737795 - 48737657
Alignment:
Q  31 ttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgtccttattattatttttaaac--cttcactt 128  Q
    ||||| ||||||||||||||||||||| |||| |||||||||||||| | ||||||||||||||||||| |||| | |||||||| ||||   |||||||    
T  48737795 ttgacaatttcacacagattaagaaaagtgtagagatgaaagaaagaaaatgatatttttactgaattgcccttgtcattattttgaaactttttcactt 48737696  T
Q  129 ttaaataatgattactttctttgttccactacaaacttt 167  Q
    |||| ||||||||| ||||||||||||||||||||||||    
T  48737695 ttaagtaatgattattttctttgttccactacaaacttt 48737657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 13542792 - 13542957
Alignment:
Q  1 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 99  Q
    |||||| |||||||||||||||||||  |||| |||||||||| | |||||||||||| ||||||||||||||||||||| ||||| ||||||||| |||    
T  13542792 tactccatccgtccctgaataagtgacctatttgaccatttcatatagattaagaaaagtgtaaagatgaaagaaagagattgatacttttactgagttg 13542891  T
Q  100 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaa 163  Q
     |||| | |||||||| ||||   ||||||||||| |||||||||||||||||||| | |||||||    
T  13542892 cccttgtcattattttaaaactttttcacttttaagtaatgattactttctttgtttcgctacaaa 13542957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 166; Significance: 6e-89; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 36767876 - 36768114
Alignment:
Q  1 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 99  Q
    |||||| ||| |||||||||||||||  |||| ||||| |||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||    
T  36767876 tactccgtccctccctgaataagtgacctatttgaccacttcacacagattaaaaagagtgtaaagatgaaagaaagagagtgatatttttactgaattg 36767975  T
Q  100 tccttattattatttttaaaccttcacttttaaataatgattactttctttgttccactacaaacttttactgcaaccaattaataaactttgctctaca 199  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||    
T  36767976 cccttattattatttttaaaccttcacttttaaataatgattactttctttgttccactacaaatttttactgcaaccaatgaataacctttgctctaca 36768075  T
Q  200 tgccaaagctacgtaactatcagataccaatatgcctatgc 240  Q
    ||||||||||||||  || ||| ||||||||||||||||||    
T  36768076 tgccaaagctacgt--ctctcatataccaatatgcctatgc 36768114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 15 - 240
Target Start/End: Complemental strand, 33404515 - 33404289
Alignment:
Q  15 ctgaataagtgattta-ttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgtccttattattatt 113  Q
    ||||||||||||  || |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  33404515 ctgaataagtgacctacttgatcattttacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgcccttattattatt 33404416  T
Q  114 tttaaaccttcacttttaaataatgattactttctttgttccactacaaacttttactgcaaccaattaataaactttgctctacatgccaaagctacgt 213  Q
    |||||||||| ||||||||||||| ||||||||  |||||||||||||||| |||||| |||||||| ||||||||||||| |||||| ||||||||| |    
T  33404415 tttaaacctttacttttaaataataattactttaattgttccactacaaacatttacttcaaccaatgaataaactttgctttacatggcaaagctacat 33404316  T
Q  214 aactatcagataccaatatgcctatgc 240  Q
      || ||||||| ||||||||||||||    
T  33404315 tgctgtcagatagcaatatgcctatgc 33404289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 42897374 - 42897543
Alignment:
Q  1 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 99  Q
    ||||||||||||||||||||||||||  |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||    
T  42897374 tactccctccgtccctgaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttg 42897473  T
Q  100 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 167  Q
     |||| | |||||||| ||||   ||||||||||| ||||||||||||||||||||||||||||||||||    
T  42897474 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaacttt 42897543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 31 - 167
Target Start/End: Original strand, 2970697 - 2970834
Alignment:
Q  31 ttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgtccttatt-attatttttaaaccttcacttt 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||| |||| || |||||||| |||||||||||||    
T  2970697 ttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagataatgatattttcactgaattgcccttgttaattattttgaaaccttcacttt 2970796  T
Q  130 taaataatgattactttctttgttccactacaaacttt 167  Q
    ||| ||||||||||||||||||||||||||||||||||    
T  2970797 taagtaatgattactttctttgttccactacaaacttt 2970834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 36982486 - 36982317
Alignment:
Q  1 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 99  Q
    ||||||||||||||||||||||||||  |||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||| |||    
T  36982486 tactccctccgtccctgaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaaaagagtgatacttttactgagttg 36982387  T
Q  100 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 167  Q
     |||| | |||||||| ||||   ||||||||||| ||||||||| ||| ||||||||||||||||||||    
T  36982386 cccttgtcattattttgaaactttttcacttttaagtaatgattattttatttgttccactacaaacttt 36982317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 14044355 - 14044187
Alignment:
Q  1 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 99  Q
    ||||||||||||||||||||||||||  |||| || ||||||||||  |||||||||| ||||||||||||||||||||||||||| ||| ||| | |||    
T  14044355 tactccctccgtccctgaataagtgacctatttgatcatttcacacgtattaagaaaagtgtaaagatgaaagaaagagagtgatacttt-actaagttg 14044257  T
Q  100 tccttattattatttttaaacctt--cacttttaaataatgattactttctttgttccactacaaacttt 167  Q
     |||| | |||||||| |||| ||  ||||||||||||||||||||||| ||||||||||||||||||||    
T  14044256 cccttgtcattattttgaaactttttcacttttaaataatgattactttatttgttccactacaaacttt 14044187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 5712716 - 5712601
Alignment:
Q  1 tactccctccgtccctgaataagtgattta-ttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 99  Q
    |||||||||||||||||||||| |||  || ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  5712716 tactccctccgtccctgaataaatgacctacttgaccattccacacagattaagaaaaatgtaaagatgaaagaaagaaagtgatattttttctgaattg 5712617  T
Q  100 tccttattattatttt 115  Q
     |||||||||||||||    
T  5712616 cccttattattatttt 5712601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 62
Target Start/End: Original strand, 36006844 - 36006875
Alignment:
Q  31 ttgaccatttcacacagattaagaaaaatgta 62  Q
    ||||||||||||||||||||||||||||||||    
T  36006844 ttgaccatttcacacagattaagaaaaatgta 36006875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 22338268 - 22338028
Alignment:
Q  1 tactccctccgtccctgaataagtgattta-ttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 99  Q
    |||||||||||||||| |||||||||  || || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  22338268 tactccctccgtccctaaataagtgacctacttaaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatatttttactgaattg 22338169  T
Q  100 tccttattattatttttaaaccttcacttttaaataatgattactttctttgttccactacaaacttttactgcaaccaattaataaactttgctctaca 199  Q
     ||||||||||||||||||||||||||||||||||||| ||||||||   | ||||||||||||||||||||||||||||| ||||||||||| | ||||    
T  22338168 cccttattattatttttaaaccttcacttttaaataataattactttaaatattccactacaaacttttactgcaaccaatgaataaactttgttataca 22338069  T
Q  200 tgccaaagctacgtaactatcagataccaatatgcctatgc 240  Q
    |||||||| |||||| || ||||||||||||||||||||||    
T  22338068 tgccaaagttacgtagctgtcagataccaatatgcctatgc 22338028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 10 - 240
Target Start/End: Complemental strand, 22620041 - 22619810
Alignment:
Q  10 cgtccctgaataagtgattta-ttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgtccttatta 108  Q
    |||||||||||||||||  || |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| | ||||||    
T  22620041 cgtccctgaataagtgacctacttgatcatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatatttttattgaattgcctttatta 22619942  T
Q  109 ttatttttaaaccttcacttttaaataatgattactttctttgttccactacaaacttttactgcaaccaattaataaactttgctctacatgccaaagc 208  Q
    ||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  22619941 ttatttttaaaccttcacttttaaataataattactttaattgttccactacaaacttttactgcaaccaatgaataaactttgctctacatgccaaagc 22619842  T
Q  209 tacgtaactatcagataccaatatgcctatgc 240  Q
    |||||| || ||||||| |||||||| |||||    
T  22619841 tacgtagctgtcagatatcaatatgcatatgc 22619810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 4041247 - 4041078
Alignment:
Q  1 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 99  Q
    |||||||||||||||| |||||||||  |||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||| |||    
T  4041247 tactccctccgtcccttaataagtgacatatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagggagtgatacttttactgagttg 4041148  T
Q  100 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 167  Q
    ||||| | |||||||| ||||   ||||||||||| ||||||||||||||||||||||||||||||||||    
T  4041147 tccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaacttt 4041078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 40232115 - 40232284
Alignment:
Q  1 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 99  Q
    |||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||| |||    
T  40232115 tactccctccgtcccttaataagtgatctatttgaccatttcacacagattaagaaaagtgtaaagataaaagaaagagagtgatacttttactgagttg 40232214  T
Q  100 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 167  Q
     |||| | |||||||| ||||   ||||||||||| ||||||||||||||||||||||||||||||||||    
T  40232215 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaacttt 40232284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 25943649 - 25943816
Alignment:
Q  1 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 99  Q
    ||||||||||||||||||||||||||  |||| || |||||||||  ||||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  25943649 tactccctccgtccctgaataagtgacctatttgatcatttcaca--gattaagaaaattgtaaagatgaaagaaagagagtgatacttttactgaattg 25943746  T
Q  100 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 167  Q
     | || | |||||||| ||||   ||||||||||| ||||||||||||||||||||||||||||||||||    
T  25943747 ccattgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaacttt 25943816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 6392571 - 6392402
Alignment:
Q  1 tactccctccgtccctgaataagtgatttattg-accatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 99  Q
    |||||||||||||| |||||||||||  ||||  |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| | |||    
T  6392571 tactccctccgtccttgaataagtgacatattttaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactaagttg 6392472  T
Q  100 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 167  Q
     |||| | |||||||| ||||   ||||||||||| ||||||||| ||||||||||||||||||||||||    
T  6392471 cccttgtcattattttgaaactttttcacttttaagtaatgattaatttctttgttccactacaaacttt 6392402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 27596086 - 27596255
Alignment:
Q  1 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 99  Q
    |||||||||||||||| ||||||||| ||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||  |||    
T  27596086 tactccctccgtccctaaataagtgacttatttgaccattttacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgggttg 27596185  T
Q  100 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 167  Q
     |||| | |||||||| ||||   ||||||||||| ||||||||| |||||||||| |||||||||||||    
T  27596186 cccttgtcattattttgaaactttttcacttttaagtaatgattattttctttgtttcactacaaacttt 27596255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 12 - 167
Target Start/End: Complemental strand, 29737694 - 29737536
Alignment:
Q  12 tccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgtccttattatt 110  Q
    ||||| ||||||||| ||||| ||||||||||||||||||||||||| |||||| || ||||||||||||||||| ||||||||| ||| |||| | |||    
T  29737694 tcccttaataagtgacttatttgaccatttcacacagattaagaaaagtgtaaaaataaaagaaagagagtgatacttttactgagttgcccttgtcatt 29737595  T
Q  111 atttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 167  Q
    ||||| ||||   ||||||||||| ||||||||||||||||||||||||||||||||||    
T  29737594 attttgaaactttttcacttttaagtaatgattactttctttgttccactacaaacttt 29737536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 9 - 167
Target Start/End: Original strand, 31689361 - 31689522
Alignment:
Q  9 ccgtccctgaataagtgatttattg-accatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgtccttatt 107  Q
    |||||||| |||||||||  ||||  |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||| |||| |     
T  31689361 ccgtccctaaataagtgacatatttcaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttgcccttgtc 31689460  T
Q  108 attatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 167  Q
    |||||||| ||||   |||||||||||| ||||||||||||||||||| ||||| |||||||    
T  31689461 attattttgaaactttttcacttttaaaaaatgattactttctttgtttcactataaacttt 31689522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 34 - 170
Target Start/End: Original strand, 21442834 - 21442970
Alignment:
Q  34 accatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgtccttattattatttttaaaccttcacttttaaa 133  Q
    ||||||||| |||||||||||||| ||||||||||||| ||| ||| ||||||||||||| ||||| |||| |||||||||| |||| |||||||||||     
T  21442834 accatttcatacagattaagaaaagtgtaaagatgaaaaaaatagaatgatatttttactaaattgcccttgttattattttgaaactttcacttttaag 21442933  T
Q  134 taatgattactttctttgttccactacaaacttttac 170  Q
    ||||| ||||||||||| ||||||| |||||||||||    
T  21442934 taatggttactttctttattccactgcaaacttttac 21442970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 41427648 - 41427817
Alignment:
Q  1 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 99  Q
    ||||||||||||| || ||||| || | |||| || ||||||||||||||||| |||| ||||||||||||||||||||||| ||| ||||| |||||||    
T  41427648 tactccctccgtctctaaataaatggtctatttgatcatttcacacagattaaaaaaagtgtaaagatgaaagaaagagagtaatacttttattgaattg 41427747  T
Q  100 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 167  Q
     |||| | |||||||| ||||   ||||||||||| |||||||||||||||||||| |||||||||||||    
T  41427748 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgtttcactacaaacttt 41427817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 43 - 167
Target Start/End: Original strand, 38276588 - 38276714
Alignment:
Q  43 cacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgtccttattattatttttaaac--cttcacttttaaataatgat 140  Q
    |||||||||||||||  |||||||||||||||||||| |||| |||||||||||||| |||| | |||||||| ||||   ||||||||||| |||||||    
T  38276588 cacagattaagaaaagagtaaagatgaaagaaagagaatgatgtttttactgaattgcccttgtcattattttgaaactttttcacttttaagtaatgat 38276687  T
Q  141 tactttctttgttccactacaaacttt 167  Q
    |||||||||||||||||||||||||||    
T  38276688 tactttctttgttccactacaaacttt 38276714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 62 - 170
Target Start/End: Complemental strand, 48838296 - 48838188
Alignment:
Q  62 aaagatgaaagaaagagagtgatatttttactgaattgtccttattattatttttaaaccttcacttttaaataatgattactttctttgttccactaca 161  Q
    |||||| ||||||||| | ||||||||||||| |||||||||| |||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||    
T  48838296 aaagataaaagaaagaaaatgatatttttactaaattgtccttgttattattttaaaactttcacttttaagtaatgattactttctttgttccactaca 48838197  T
Q  162 aacttttac 170  Q
     ||||||||    
T  48838196 cacttttac 48838188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 31 - 167
Target Start/End: Original strand, 24300185 - 24300313
Alignment:
Q  31 ttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgtccttattattatttttaaaccttcactttt 130  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||| ||| |||| | |  | |||      |||||||||    
T  24300185 ttgaccatttcacacagattaagaaaagtgtgaagatgaaagaaagagagtgatacttttactgagttgcccttgtaa--acttt------ttcactttt 24300276  T
Q  131 aaataatgattactttctttgttccactacaaacttt 167  Q
    || |||||||||||||||||||| |||||||||||||    
T  24300277 aagtaatgattactttctttgtttcactacaaacttt 24300313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 7380535 - 7380592
Alignment:
Q  1 tactccctccgtccctgaataagtgattta-ttgaccatttcacacagattaagaaaa 57  Q
    |||| ||||||||  |||||||||||| || |||||||||||||||||||||| ||||    
T  7380535 tacttcctccgtctttgaataagtgatctacttgaccatttcacacagattaaaaaaa 7380592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 1643271 - 1643315
Alignment:
Q  36 catttcacacagattaagaaaaatgtaaagatgaaagaaagagag 80  Q
    ||||||||||| ||||||||||||||| | |||||||| ||||||    
T  1643271 catttcacacatattaagaaaaatgtataaatgaaagagagagag 1643315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 79
Target Start/End: Complemental strand, 2849410 - 2849366
Alignment:
Q  35 ccatttcacacagattaagaaaaatgtaaagatgaaagaaagaga 79  Q
    |||||||||||| ||||||||||||||| | |||||||| |||||    
T  2849410 ccatttcacacatattaagaaaaatgtataaatgaaagagagaga 2849366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 11147949 - 11147755
Alignment:
Q  1 tactccctccgtccctgaataagtgattta-ttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 99  Q
    ||||||||||||||||||||||||||  || |||| |||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||    
T  11147949 tactccctccgtccctgaataagtgacctacttgatcatttcacacagattaagaaaagtgtaaagatgaaaggaagagaatgatatttttactgaattg 11147850  T
Q  100 tccttattattatttttaaaccttcacttttaaataatgattactttctttgttccactacaaacttttactgcaaccaattaataaactttgct 194  Q
     ||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||||||| |||||||||||||    
T  11147849 cccttattattatttttaaaccttcacttttaaataataattactttaattgttccactacaaacttttactgcaaccaataaataaactttgct 11147755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 9754069 - 9753898
Alignment:
Q  1 tactccctccgtccctgaataagtgattta-ttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 99  Q
    |||||||||||||||| ||||  |||  || ||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||    
T  9754069 tactccctccgtccctcaatacttgacctacttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagataatgatatttttactgaattg 9753970  T
Q  100 tccttatt-attatttttaaaccttcacttttaaataatgattactttctttgttccactacaaacttttac 170  Q
    ||||| || |||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  9753969 tccttgttaattattttgaaaccttcacttttaagtaatgattactttctttgtttcactacaaacttttac 9753898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 39907208 - 39907039
Alignment:
Q  1 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 99  Q
    |||||||||||||||| ||||||||| ||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||    
T  39907208 tactccctccgtcccttaataagtgacttatttgaccattttacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttg 39907109  T
Q  100 tccttattattatttttaaa--ccttcacttttaaataatgattactttctttgttccactacaaacttt 167  Q
     |||||| |||||||| |||    ||||||||||| ||||||||||||||||||||||||||||||||||    
T  39907108 cccttatcattattttgaaattttttcacttttaagtaatgattactttctttgttccactacaaacttt 39907039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 18575328 - 18575159
Alignment:
Q  1 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 99  Q
    ||||||||||||||||||||||||||  |||| || ||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||| |||    
T  18575328 tactccctccgtccctgaataagtgacctatttgatcatttcacacaaattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttg 18575229  T
Q  100 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 167  Q
     |||| | |||||||| ||||   ||||||||||| ||||||||| ||||||||||||||||||||||||    
T  18575228 cccttgtcattattttgaaactttttcacttttaagtaatgattattttctttgttccactacaaacttt 18575159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 31 - 170
Target Start/End: Original strand, 13243578 - 13243718
Alignment:
Q  31 ttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgtccttatt-attatttttaaaccttcacttt 129  Q
    ||||||||||||||| ||||||||||| ||||||||| ||||||||| | |||||||||||||||||||||||| || |||||||| ||||||||| |||    
T  13243578 ttgaccatttcacaccgattaagaaaagtgtaaagataaaagaaagataatgatatttttactgaattgtccttgttaattattttgaaaccttcatttt 13243677  T
Q  130 taaataatgattactttctttgttccactacaaacttttac 170  Q
    ||| ||||||||| |||||||||||||||||||||||||||    
T  13243678 taagtaatgattattttctttgttccactacaaacttttac 13243718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 11254800 - 11254631
Alignment:
Q  1 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 99  Q
    ||||||||||||||||||||||||||  |||| ||||||| |||| | |||||||||| ||||||||||||||||||||||||||| ||||||||| |||    
T  11254800 tactccctccgtccctgaataagtgacctatttgaccattccacataaattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttg 11254701  T
Q  100 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 167  Q
     |||| | |||||||| ||||   ||||||||||| ||||||||| ||||||||||||||||||||||||    
T  11254700 cccttgtcattattttgaaactttttcacttttaagtaatgattattttctttgttccactacaaacttt 11254631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 17493826 - 17493657
Alignment:
Q  1 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 99  Q
    ||||||||||||||||||||||||||  |||| || |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| | |||    
T  17493826 tactccctccgtccctgaataagtgacctatttgatcatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactaagttg 17493727  T
Q  100 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 167  Q
     |||| | |||||||| ||||   |||| |||||| ||||||||||||| ||||||||||||||||||||    
T  17493726 cccttgtcattattttgaaactttttcatttttaagtaatgattactttatttgttccactacaaacttt 17493657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 31 - 167
Target Start/End: Original strand, 12738397 - 12738535
Alignment:
Q  31 ttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgtccttattattatttttaaac--cttcactt 128  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||||| | ||||||||||||||||||| |||| | |||||||| ||||   |||||||    
T  12738397 ttgaccatttcacacagattaagaaaagtgtaaagataaaagaaagataatgatatttttactgaattgcccttgtcattattttgaaactttttcactt 12738496  T
Q  129 ttaaataatgattactttctttgttccactacaaacttt 167  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  12738497 ttaagtaatgattactttctttgttccactacaaacttt 12738535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 27821073 - 27820908
Alignment:
Q  1 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 99  Q
    |||||||| ||||| | |||||||||  |||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||| |||    
T  27821073 tactcccttcgtcctttaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagataaaagaaagagagtgatacttttactgagttg 27820974  T
Q  100 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaa 163  Q
     |||| | |||||||| ||||   ||||||||||| ||||||||||||||||||||||||||||||    
T  27820973 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaa 27820908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 4 - 167
Target Start/End: Original strand, 38069898 - 38070064
Alignment:
Q  4 tccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgtcc 102  Q
    ||||||||||| |||| ||||||  |||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||| ||| ||    
T  38069898 tccctccgtccttgaacaagtgacctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagatagtgatacttttactgagttgccc 38069997  T
Q  103 ttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 167  Q
    || | |||||||| ||||   |||| |||||| ||||||||| ||||||||||||||||||||||||    
T  38069998 ttgtcattattttgaaactttttcatttttaagtaatgattattttctttgttccactacaaacttt 38070064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 31 - 167
Target Start/End: Original strand, 17336002 - 17336139
Alignment:
Q  31 ttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgtccttattattatttttaaac--cttcactt 128  Q
    ||||| |||||||| | |||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||| | |||||||| ||||   |||||||    
T  17336002 ttgacaatttcacataaattaagaaaa-tgtaaagatgaaagaaagagaatgatatttttactgaactgtccttgtcattattttgaaactttttcactt 17336100  T
Q  129 ttaaataatgattactttctttgttccactacaaacttt 167  Q
    |||| |||||||||||||| ||||||||||| |||||||    
T  17336101 ttaagtaatgattactttcgttgttccactagaaacttt 17336139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 79
Target Start/End: Complemental strand, 29638457 - 29638412
Alignment:
Q  34 accatttcacacagattaagaaaaatgtaaagatgaaagaaagaga 79  Q
    |||||||||||||||||||||||| |||| | ||||||||||||||    
T  29638457 accatttcacacagattaagaaaagtgtataaatgaaagaaagaga 29638412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 131; Significance: 5e-68; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 2 - 240
Target Start/End: Original strand, 28689666 - 28689910
Alignment:
Q  2 actccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgt 100  Q
    |||||||| ||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||  ||| | ||  |||||||||||||||||     
T  28689666 actccctctgtccctgaataagtgatctatttgactatttcacacagattaagaaaaatgtaaagatgaagaaaaaaaag--atatttttactgaattgc 28689763  T
Q  101 ccttattattatttttaaaccttcacttttaaataatgattactttctttgttccactacaaacttttactgcaaccaattaat-aaactttgctctaca 199  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||  |||||||||||||||||||||||||||||||| ||| |||||||||| ||||    
T  28689764 ccttattattatttttaaaccttca-ttttaaataataattactttaattgttccactacaaacttttactgcaaccaatgaataaaactttgctataca 28689862  T
Q  200 tgccaaagctacgt-------aactatcagataccaatatgcctatgc 240  Q
    ||||||||||||||       | |||||||||||||||||||||||||    
T  28689863 tgccaaagctacgtagctgtcagctatcagataccaatatgcctatgc 28689910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 3172020 - 3172191
Alignment:
Q  1 tactccctccgtccctgaataagtgattta-ttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 99  Q
    |||||||| ||||||| ||||  |||| || ||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||    
T  3172020 tactcccttcgtccctcaatacttgatctacttgaccatttcacacagattaagaaaaatgtaaagatgaaaaaaagataatgatatttttactgaattg 3172119  T
Q  100 tccttatt-attatttttaaaccttcacttttaaataatgattactttctttgttccactacaaacttttac 170  Q
    ||||| || |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  3172120 tccttgttaattattttgaaaccttcacttttaagtaatgattactttctttgttccactacaaacttttac 3172191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 37 - 170
Target Start/End: Original strand, 28910195 - 28910328
Alignment:
Q  37 atttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgtccttattattatttttaaaccttcacttttaaataa 136  Q
    |||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||| |||    
T  28910195 atttcacatagattaagaaaaatgcaaagatgaaagaaagagaatgatatttttactgaattgtccttgttattattttgaaaccttcacttttaagtaa 28910294  T
Q  137 tgattactttctttgttccactacaaacttttac 170  Q
    ||||||||||||||||||||||| ||||||||||    
T  28910295 tgattactttctttgttccactagaaacttttac 28910328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 39788293 - 39788124
Alignment:
Q  1 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 99  Q
    |||||||| |||||||||||||||||  |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||    
T  39788293 tactcccttcgtccctgaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttg 39788194  T
Q  100 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 167  Q
     |||| | |||||||| ||||   ||||||||||| ||||||||||||||||||||||||||||||||||    
T  39788193 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaacttt 39788124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 47199786 - 47199617
Alignment:
Q  1 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 99  Q
    |||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||    
T  47199786 tactccctccgtacctgaataagtgatctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatatttttattgagttg 47199687  T
Q  100 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 167  Q
     |||| | |||||||| ||||   ||||||||||| ||||||||| ||||||||||||||||||||||||    
T  47199686 cccttgtcattattttaaaactttttcacttttaagtaatgattattttctttgttccactacaaacttt 47199617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 40071449 - 40071618
Alignment:
Q  1 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 99  Q
    |||||||||||||||| |||||||||  |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||    
T  40071449 tactccctccgtcccttaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttg 40071548  T
Q  100 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 167  Q
     |||| | |||||||| ||||   |||||||||||  |||||||||||||||||||||||||||||||||    
T  40071549 cccttgtcattattttgaaactttttcacttttaagcaatgattactttctttgttccactacaaacttt 40071618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 54438157 - 54438326
Alignment:
Q  1 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 99  Q
    |||||||||||||||| |||||||||  |||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||| |||    
T  54438157 tactccctccgtccctaaataagtgacctatttgaccatttcacaccgattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttg 54438256  T
Q  100 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 167  Q
     |||| | |||||||| ||||   ||||||||||| ||||||||||||||||||||||||||||||||||    
T  54438257 cccttgtcattattttaaaactttttcacttttaagtaatgattactttctttgttccactacaaacttt 54438326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 4 - 167
Target Start/End: Original strand, 33800786 - 33800952
Alignment:
Q  4 tccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgtcc 102  Q
    |||||||||||||||||||||||  |||| |||||||||||||||||| |||||| |||||||||| |||||||||||||||| ||||||||| ||| ||    
T  33800786 tccctccgtccctgaataagtgacctatttgaccatttcacacagattcagaaaagtgtaaagatggaagaaagagagtgatacttttactgagttgccc 33800885  T
Q  103 ttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 167  Q
    || | || ||||| ||||   ||||||||||||||||||||||||||||||||||||||||||||||    
T  33800886 ttgtcatcattttgaaactttttcacttttaaataatgattactttctttgttccactacaaacttt 33800952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 20789972 - 20789804
Alignment:
Q  1 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 99  Q
    |||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||  ||    
T  20789972 tactccctccgttcctgaataagtgatctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagctg 20789873  T
Q  100 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 167  Q
     |||| | |||||||| ||||   ||||||||||| ||||||||| ||||||||||||||||||||||||    
T  20789872 -ccttgtcattattttgaaactttttcacttttaagtaatgattattttctttgttccactacaaacttt 20789804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 925136 - 925305
Alignment:
Q  1 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 99  Q
    |||||||||||||||| ||||||||| ||||| || |||||||||||||||||||||| ||||||||| ||||||| | ||||||| ||||||||| |||    
T  925136 tactccctccgtcccttaataagtgacttatttgatcatttcacacagattaagaaaagtgtaaagataaaagaaataaagtgatacttttactgagttg 925235  T
Q  100 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 167  Q
     |||| | |||||||| ||||   ||||||||||| ||||||||||||||||||||||||||||||||||    
T  925236 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaacttt 925305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 17494053 - 17493884
Alignment:
Q  1 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 99  Q
    |||||||||||||||| |||||||||  |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||| |||    
T  17494053 tactccctccgtcccttaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttattgagttg 17493954  T
Q  100 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 167  Q
     |||| | |||||||| ||||   ||||||||||| |||| |||| ||||||||||||||||||||||||    
T  17493953 cccttgtcattattttgaaactttttcacttttaagtaataattattttctttgttccactacaaacttt 17493884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 37064753 - 37064922
Alignment:
Q  1 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 99  Q
    |||||| |||||||||||||||||||  |||| || ||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||| |||    
T  37064753 tactccatccgtccctgaataagtgacctatttgatcatttcacatagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttg 37064852  T
Q  100 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 167  Q
     |||| | ||| |||| ||||   ||||||||||| ||||||||||||||||||||||||||||||||||    
T  37064853 cccttgtcatttttttgaaactttttcacttttaagtaatgattactttctttgttccactacaaacttt 37064922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 31 - 167
Target Start/End: Original strand, 32217968 - 32218106
Alignment:
Q  31 ttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgtccttattattatttttaaac--cttcactt 128  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||||| | ||||||||||||||| |||||| | |||||||| ||||   |||||||    
T  32217968 ttgaccatttcacacagattaagaagagtgtaaagatgaaagaaagagaattatatttttactgaatagtccttgtcattattttgaaactttttcactt 32218067  T
Q  129 ttaaataatgattactttctttgttccactacaaacttt 167  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  32218068 ttaagtaatgattactttctttgttccactacaaacttt 32218106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 31 - 170
Target Start/End: Complemental strand, 46870874 - 46870735
Alignment:
Q  31 ttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgtccttattattatttttaaaccttcactttt 130  Q
    ||||| |||||||||| | ||| |||| || || ||||||||||||||| ||||||||||||||||| |||||| |||||||||| ||||||||||||||    
T  46870874 ttgacaatttcacacatagtaaaaaaagtgcaaggatgaaagaaagagaatgatatttttactgaatagtccttgttattattttgaaaccttcactttt 46870775  T
Q  131 aaataatgattactttctttgttccactacaaacttttac 170  Q
    || ||||||| |||||||||||||||||||||||||||||    
T  46870774 aagtaatgatgactttctttgttccactacaaacttttac 46870735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 31 - 167
Target Start/End: Complemental strand, 21240595 - 21240457
Alignment:
Q  31 ttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgtccttattattatttttaaac--cttcactt 128  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||| | || | | |||||| ||||   |||| ||    
T  21240595 ttgaccatttcacacagattaagaaaagtgtagagatgaaagaaagagaatgatatttttactgaattgacattgtcactattttgaaactttttcattt 21240496  T
Q  129 ttaaataatgattactttctttgttccactacaaacttt 167  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  21240495 ttaagtaatgattactttctttgttccactacaaacttt 21240457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 35 - 170
Target Start/End: Complemental strand, 41555720 - 41555590
Alignment:
Q  35 ccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgtccttattattatttttaaaccttcactttt--aa 132  Q
    ||||||||||||||||||||||| |||||||||||||||    || |||||||||||||||||||||   ||||||||||||||||||||||||||  ||    
T  41555720 ccatttcacacagattaagaaaagtgtaaagatgaaaga----gaatgatatttttactgaattgtc---attattatttttaaaccttcacttttttaa 41555628  T
Q  133 ataatgattactttctttgttccactacaaacttttac 170  Q
     |||||||||||||||||||| ||||||||||||||||    
T  41555627 gtaatgattactttctttgtttcactacaaacttttac 41555590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 34408657 - 34408826
Alignment:
Q  1 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 99  Q
    ||||||||||||||||||||||||||  |||| | |||||||||||| |||| ||||| ||||||||||||||||||||| ||||| ||||| ||| |||    
T  34408657 tactccctccgtccctgaataagtgacctatttggccatttcacacatattaggaaaagtgtaaagatgaaagaaagagaatgatacttttattgagttg 34408756  T
Q  100 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 167  Q
     |||| | |||||||| ||||   ||||||||||| ||||||||| ||||||||||  ||||||||||||    
T  34408757 cccttgtcattattttgaaactttttcacttttaagtaatgattattttctttgttatactacaaacttt 34408826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 10441631 - 10441518
Alignment:
Q  1 tactccctccgtccctgaataagtgattta-ttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 99  Q
    ||||||||||||||||||||||||||  || |||||||||||||||||||||||| || ||||||||| ||||||  |||||||||||||||||||||||    
T  10441631 tactccctccgtccctgaataagtgacctacttgaccatttcacacagattaagataagtgtaaagataaaagaa--agagtgatatttttactgaattg 10441534  T
Q  100 tccttattattatttt 115  Q
     |||||||||||||||    
T  10441533 cccttattattatttt 10441518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 31 - 167
Target Start/End: Complemental strand, 52101317 - 52101179
Alignment:
Q  31 ttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgtccttattattatttttaaa--ccttcactt 128  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||| | | |||||||||||||||||||  ||| | |||||||| |||    |||||||    
T  52101317 ttgactatttcacacagattaagaaaagtgtaaagatgaaagaaatataatgatatttttactgaattgcacttgtcattattttgaaattttttcactt 52101218  T
Q  129 ttaaataatgattactttctttgttccactacaaacttt 167  Q
    |||| ||||| ||| ||||||||||||||||||||||||    
T  52101217 ttaagtaatggttattttctttgttccactacaaacttt 52101179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 31 - 163
Target Start/End: Original strand, 53509673 - 53509807
Alignment:
Q  31 ttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgtccttattattatttttaaac--cttcactt 128  Q
    ||||| |||| ||||  |||| ||||| ||||||||||||||||| ||| ||||||| ||||||||||||| || | |||||||| ||||   |||||||    
T  53509673 ttgacaattttacacttattatgaaaagtgtaaagatgaaagaaaaagaatgatattgttactgaattgtcattgtcattattttgaaactttttcactt 53509772  T
Q  129 ttaaataatgattactttctttgttccactacaaa 163  Q
    |||||||||||||| ||||||||||||||||||||    
T  53509773 ttaaataatgattattttctttgttccactacaaa 53509807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 51744519 - 51744659
Alignment:
Q  1 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 99  Q
    ||||| ||||||||||||||||||||  |||| ||||||||||||||||||||||||| ||||||||||  ||||||||||||||| ||||||| | |||    
T  51744519 tactctctccgtccctgaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagatgtgagaaagagagtgatacttttactaagttg 51744618  T
Q  100 tccttattattatttttaaac--cttcacttttaaataatg 138  Q
     |||| | |||||||| ||||   ||||||||||| |||||    
T  51744619 cccttgtcattattttgaaacttgttcacttttaagtaatg 51744659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 79
Target Start/End: Original strand, 48400584 - 48400627
Alignment:
Q  36 catttcacacagattaagaaaaatgtaaagatgaaagaaagaga 79  Q
    ||||||||||||||||||||||||||| | |||||||| |||||    
T  48400584 catttcacacagattaagaaaaatgtataaatgaaagagagaga 48400627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 73
Target Start/End: Original strand, 39052854 - 39052891
Alignment:
Q  36 catttcacacagattaagaaaaatgtaaagatgaaaga 73  Q
    ||||||||||||||||||||||||||| | ||||||||    
T  39052854 catttcacacagattaagaaaaatgtataaatgaaaga 39052891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 79
Target Start/End: Original strand, 29550679 - 29550723
Alignment:
Q  35 ccatttcacacagattaagaaaaatgtaaagatgaaagaaagaga 79  Q
    |||||||||||||||||||||||||||| | | |||||| |||||    
T  29550679 ccatttcacacagattaagaaaaatgtataaaggaaagagagaga 29550723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 107; Significance: 9e-54; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 40562436 - 40562606
Alignment:
Q  1 tactccctccgtccctgaataagtgattta-ttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 99  Q
    |||||||||||||||| ||||  |||  || ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  40562436 tactccctccgtccctcaatacttgacctacttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagaatgatatttttactgaattg 40562535  T
Q  100 tccttattattatttttaaaccttcacttttaaataatgattactttctttgttccactacaaacttttac 170  Q
     |||| |||||||||| |||| || |||||||| ||||||||||||||||||||| |||||||||||||||    
T  40562536 cccttgttattattttgaaacttttacttttaagtaatgattactttctttgttctactacaaacttttac 40562606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 4 - 167
Target Start/End: Original strand, 39150900 - 39151066
Alignment:
Q  4 tccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgtcc 102  Q
    ||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||| ||| ||    
T  39150900 tccctccgtcccttaataagtgatctatttgaccatttcacacagattaagaaaaatgtaaagataaaagaaagagaatgatacttttactgagttgccc 39150999  T
Q  103 ttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 167  Q
    || | |||||||| ||||   ||||||||||| ||||||||||||||||||||||||||||||||||    
T  39151000 ttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaacttt 39151066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 50777297 - 50777128
Alignment:
Q  1 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 99  Q
    |||||||||||||||| |||||||||  |||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||| |||    
T  50777297 tactccctccgtcccttaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagataaaagaaagagagtgatacttttactgagttg 50777198  T
Q  100 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 167  Q
     |||| | |||||||| ||||   ||||||||||| ||||||||||||||||||||||||||||||||||    
T  50777197 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaacttt 50777128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 46862856 - 46862687
Alignment:
Q  1 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 99  Q
    |||||||||||||||| |||||||||  |||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||| |||| |||    
T  46862856 tactccctccgtcccttaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagataaaagaaagagagtgatacttttcctgagttg 46862757  T
Q  100 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 167  Q
     |||| | |||||||| ||||   ||||||||||| ||||||||||||||||||||||||||||||||||    
T  46862756 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaacttt 46862687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 5 - 167
Target Start/End: Complemental strand, 46371217 - 46371057
Alignment:
Q  5 ccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgtcct 103  Q
    |||||||||||| |||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||    
T  46371217 ccctccgtcccttaataagtgatctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgaattgccct 46371118  T
Q  104 tattattatttttaaaccttcacttttaaataatgattactttctttgttccactacaaacttt 167  Q
    | | |||||||| |||| ||   ||  || ||||||||||||||||||||||||||||||||||    
T  46371117 tgtcattattttgaaacttt---ttcaaagtaatgattactttctttgttccactacaaacttt 46371057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 9129401 - 9129574
Alignment:
Q  1 tactccctccgtccctgaataagtgattta-ttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgata---tttttactgaa 96  Q
    ||||||||| |||||| |||| ||||| || ||||| |||||||| ||||||| |||| ||||||||| ||||||||||| |||||   |||||||| ||    
T  9129401 tactccctcggtccctcaatacgtgatatacttgactatttcacaaagattaacaaaagtgtaaagataaaagaaagagaatgataatatttttactcaa 9129500  T
Q  97 ttgtccttattattatttttaaaccttcacttttaaataatgattactttctttgttccactacaaacttttac 170  Q
    |||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  9129501 ttgtccttgttattatttttaaactttcacttttaagtaatgattactttctttgttccactacaaaattttac 9129574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 28036700 - 28036870
Alignment:
Q  1 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgata-tttttactgaatt 98  Q
    |||||||| ||||||| ||||||||| ||||| |||||||||||||| |||||||||| ||||||||| ||||||||||||||||| |||||||||| ||    
T  28036700 tactcccttcgtcccttaataagtgacttatttgaccatttcacacaaattaagaaaagtgtaaagataaaagaaagagagtgatattttttactgagtt 28036799  T
Q  99 gtccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 167  Q
    | |||| | |||||||| ||||   ||||||||||| ||||||||||||||||||||||||||||||||||    
T  28036800 gcccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaacttt 28036870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 32046133 - 32045964
Alignment:
Q  1 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 99  Q
    |||||||||| || |||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||| ||||||| |||||| || |||    
T  32046133 tactccctccatcactgaataagtgatttatttgaccatttcacacagattaagaaaagtgtaaaaatgaaagaaagaaagtgatacttttaccgagttg 32046034  T
Q  100 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 167  Q
     |||| |  ||||||| ||||   ||||||||||| ||||||||||||||||||||||||||||||||||    
T  32046033 cccttgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaacttt 32045964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 35 - 167
Target Start/End: Complemental strand, 38321910 - 38321776
Alignment:
Q  35 ccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgtccttattattatttttaaac--cttcacttttaa 132  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||| |||| | |||||||| ||||   |||||||||||    
T  38321910 ccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttgcccttgtcattattttgaaactttttcacttttaa 38321811  T
Q  133 ataatgattactttctttgttccactacaaacttt 167  Q
     ||||||||||||||||||||||||||||||||||    
T  38321810 gtaatgattactttctttgttccactacaaacttt 38321776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 3 - 167
Target Start/End: Complemental strand, 8229362 - 8229194
Alignment:
Q  3 ctccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatg-aaagaaagagagtgatatttttactgaattgt 100  Q
    ||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||| ||| ||||||||||||||||||| |||     
T  8229362 ctccctcggtctctgaataagtgatttatttgaccatttcacacagattaagaaaagtgtaaagatgaaaaaaaaaagagtgatatttttactgagttgc 8229263  T
Q  101 ccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 167  Q
    |||| | |||||||| ||||   ||||||||||| ||||||||||||||||| || |||||||||||||    
T  8229262 ccttgtcattattttaaaactttttcacttttaagtaatgattactttctttatttcactacaaacttt 8229194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 1207452 - 1207621
Alignment:
Q  1 tactccctccgtccctgaataagtgattta-ttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 99  Q
    |||||||||||||||| ||||  |||  || ||||||||||||||||||||||||||| |||| |||||||||||||| | |||||||||||||||||||    
T  1207452 tactccctccgtcccttaatacttgacctacttgaccatttcacacagattaagaaaagtgtagagatgaaagaaagataatgatatttttactgaattg 1207551  T
Q  100 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 167  Q
     |||| | |||||||| ||||   ||||||||||| |||||||||||||| ||||||| |||||||||||    
T  1207552 cccttgtcattattttgaaactttttcacttttaagtaatgattactttccttgttcctctacaaacttt 1207621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 1929217 - 1929385
Alignment:
Q  1 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 99  Q
    ||||||||||||||||||||||||||  |||| || |||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||| |||    
T  1929217 tactccctccgtccctgaataagtgacatatttgatcatttcacacagattaagaaaagtgtaaagatgaaagaaaaagagtgatacttttactgagttg 1929316  T
Q  100 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 167  Q
     |||| | |||||||| ||||   ||||||||||| ||||||||  ||| ||||||||||||||||||||    
T  1929317 cccttgtcattattttgaaactttttcacttttaagtaatgatt-ttttttttgttccactacaaacttt 1929385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 83 - 170
Target Start/End: Complemental strand, 38817988 - 38817902
Alignment:
Q  83 atatttttactgaattgtccttattattatttttaaaccttcacttttaaataatgattactttctttgttccactacaaacttttac 170  Q
    ||||||||| |||||||||||| |||||||||| ||||||||| |||||| |||| ||||||||||||||| ||||||||||||||||    
T  38817988 atatttttattgaattgtccttgttattattttgaaaccttca-ttttaagtaattattactttctttgtttcactacaaacttttac 38817902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 79
Target Start/End: Complemental strand, 43896000 - 43895957
Alignment:
Q  36 catttcacacagattaagaaaaatgtaaagatgaaagaaagaga 79  Q
    ||||||||||| ||||||||||||||| |||||||||| |||||    
T  43896000 catttcacacatattaagaaaaatgtatagatgaaagagagaga 43895957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 79
Target Start/End: Complemental strand, 9590673 - 9590625
Alignment:
Q  31 ttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagaga 79  Q
    |||||||||||||| |||||||||||| |||| | |||||||| |||||    
T  9590673 ttgaccatttcacatagattaagaaaattgtataaatgaaagagagaga 9590625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 31634244 - 31634292
Alignment:
Q  31 ttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagaga 79  Q
    |||||||||||||| ||||||||||||||||| | || ||||| |||||    
T  31634244 ttgaccatttcacatagattaagaaaaatgtataaataaaagagagaga 31634292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 36326154 - 36326202
Alignment:
Q  31 ttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagaga 79  Q
    |||| |||||||||||||||||||||| |||| | |||||||| |||||    
T  36326154 ttgaacatttcacacagattaagaaaagtgtataaatgaaagagagaga 36326202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 70053 - 69884
Alignment:
Q  1 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 99  Q
    |||||||||||||||| ||||||||| ||||| |||||||| | |||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||    
T  70053 tactccctccgtccctaaataagtgacttatttgaccatttgatacagattaagaaaagtgtaaagatgaaagaaagagagtgataattttactgagttg 69954  T
Q  100 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 167  Q
    ||||| | |||||||| ||||   ||||||||||| ||||||||||||||||||||||||||||||||||    
T  69953 tccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaacttt 69884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 10017 - 10186
Alignment:
Q  1 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 99  Q
    |||||||||| ||||| |||||||||  |||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||    
T  10017 tactccctccatcccttaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagataaaagaaagagagtgatatttttactgagttg 10116  T
Q  100 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 167  Q
     |||| |||||||||| ||||   ||||||||||| |||||||||||||||||||||||||| |||||||    
T  10117 cccttgttattattttgaaactttttcacttttaagtaatgattactttctttgttccactataaacttt 10186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 98; Significance: 2e-48; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 10 - 167
Target Start/End: Complemental strand, 29182882 - 29182722
Alignment:
Q  10 cgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgtccttatta 108  Q
    ||||| |||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| | |    
T  29182882 cgtccttgaataagtgacatatttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgagttgcccttgtca 29182783  T
Q  109 ttatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 167  Q
    ||||||| ||||   ||||||||||| ||||||||| ||||||||||||||||||||||||    
T  29182782 ttattttgaaactttttcacttttaagtaatgattattttctttgttccactacaaacttt 29182722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 37 - 167
Target Start/End: Complemental strand, 30736682 - 30736550
Alignment:
Q  37 atttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgtccttattattatttttaaac--cttcacttttaaat 134  Q
    ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| | |||||||| ||||   ||||||||||| |    
T  30736682 atttcacacagattaagaaaagtgtaaagatgaaagaaagagaatgatatttttactgaattgtccttgtcattattttgaaactttttcacttttaagt 30736583  T
Q  135 aatgattactttctttgttccactacaaacttt 167  Q
    ||||||||||||||||||||| |||||||||||    
T  30736582 aatgattactttctttgttcctctacaaacttt 30736550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 12350572 - 12350403
Alignment:
Q  1 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 99  Q
    |||||||||||||| | |||||||||  |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||| |||    
T  12350572 tactccctccgtccataaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatgcttttactgagttg 12350473  T
Q  100 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 167  Q
     |||| | |||||||| ||||   ||||||||||| ||||||||||||||||||||  ||||||||||||    
T  12350472 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttttactacaaacttt 12350403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 28541587 - 28541756
Alignment:
Q  1 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 99  Q
    |||||||||||||||| |||||||||  |||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||  |||    
T  28541587 tactccctccgtccctaaataagtgacctatttgaccattttacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgggttg 28541686  T
Q  100 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 167  Q
     |||| | |||||||| ||||   ||||||||||| ||||||||| ||| ||||||||||||||||||||    
T  28541687 cccttgtcattattttgaaactttttcacttttaagtaatgattattttttttgttccactacaaacttt 28541756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 16436075 - 16435910
Alignment:
Q  1 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 99  Q
    ||||||||||||||||||||||||||  |||| || |||||||||||||||||||||| ||||||||||||||||||    ||||| ||||||||| |||    
T  16436075 tactccctccgtccctgaataagtgacctatttgagcatttcacacagattaagaaaagtgtaaagatgaaagaaag----tgatacttttactgagttg 16435980  T
Q  100 tccttattattatttttaaacctt--cacttttaaataatgattactttctttgttccactacaaacttt 167  Q
     |||| | |||||||| |||| ||  ||||||||| ||||||||||||||||||||||||||||||||||    
T  16435979 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaacttt 16435910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 31 - 170
Target Start/End: Complemental strand, 1870800 - 1870662
Alignment:
Q  31 ttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgtccttattattatttttaaaccttcactttt 130  Q
    ||||| |||| |||||||||| ||||| | |||||||||||||||| || ||||||||||||| ||||| |||| |||||||||| || |||||||||||    
T  1870800 ttgacaattttacacagatta-gaaaagtataaagatgaaagaaagggaatgatatttttactaaattgcccttgttattattttgaagccttcactttt 1870702  T
Q  131 aaataatgattactttctttgttccactacaaacttttac 170  Q
    || |||||||||||||||||||||||||||||||||||||    
T  1870701 aagtaatgattactttctttgttccactacaaacttttac 1870662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 31 - 167
Target Start/End: Original strand, 7271109 - 7271247
Alignment:
Q  31 ttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgtccttattattatttttaaac--cttcactt 128  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||| |||| | |||||||| ||||   |||||||    
T  7271109 ttgacaatttcacacagattaagaaaagtgtaaagatgaaagaaatagaatgatatttttactgaattgcccttgtcattattttgaaactttttcactt 7271208  T
Q  129 ttaaataatgattactttctttgttccactacaaacttt 167  Q
    |||| ||||||||||||||||| ||||||||||||||||    
T  7271209 ttaagtaatgattactttctttattccactacaaacttt 7271247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 31 - 170
Target Start/End: Complemental strand, 13210610 - 13210472
Alignment:
Q  31 ttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgtccttattattatttttaaaccttcactttt 130  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||  ||||||||||| | |||| ||| |||||| |||| |||||||||    
T  13210610 ttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagaatgattattttactgaatcgcccttgtta-tattttgaaactttcactttt 13210512  T
Q  131 aaataatgattactttctttgttccactacaaacttttac 170  Q
    || |||  ||||||||||||||||||||||||||||||||    
T  13210511 aagtaagaattactttctttgttccactacaaacttttac 13210472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 3 - 167
Target Start/End: Complemental strand, 13042268 - 13042103
Alignment:
Q  3 ctccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgtc 101  Q
    |||||||||||| |||||||||||| |||| ||  |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||| |    
T  13042268 ctccctccgtccttgaataagtgatctatttgattatttcacacagattaa-aaaagtgtaaagatgaaagaaagagagtgatatttttactgagttgcc 13042170  T
Q  102 cttattattattt-ttaaaccttcacttttaaataatgattactttctttgttccactacaaacttt 167  Q
    ||| | |||||||   |||  ||||||||||| ||||||||| ||||||||||||||||||||||||    
T  13042169 cttgtcattatttaaaaaattttcacttttaagtaatgattattttctttgttccactacaaacttt 13042103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 1241408 - 1241240
Alignment:
Q  1 tactccctccgtccctgaataagtgatttattg-accatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 99  Q
    |||||||||||||||||||||||| || ||||  | ||||||||||| ||||||||||||||||| |||||||||||| ||||||| ||||||||| |||    
T  1241408 tactccctccgtccctgaataagtaatctatttcatcatttcacacaaattaagaaaaatgtaaaaatgaaagaaagaaagtgatacttttactgagttg 1241309  T
Q  100 tccttattattatttttaaaccttcac-ttttaaataatgattactttctttgttccactacaaacttt 167  Q
     |||| | |||||||| |||| ||  | |||||| ||||||||||||||||||||||||| ||||||||    
T  1241308 cccttgtcattattttgaaactttttcattttaagtaatgattactttctttgttccactgcaaacttt 1241240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 31 - 167
Target Start/End: Original strand, 31013526 - 31013664
Alignment:
Q  31 ttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgtccttattattatttttaaac--cttcactt 128  Q
    |||||||||||| |||||||||||||| |||||| | |||||||||| | ||||||||||||||||||| |||||| |||||||| ||||   |||||||    
T  31013526 ttgaccatttcatacagattaagaaaagtgtaaaaacgaaagaaagataatgatatttttactgaattgcccttatcattattttgaaactttttcactt 31013625  T
Q  129 ttaaataatgattactttctttgttccactacaaacttt 167  Q
    |||| ||||||||| ||||||||||| ||||||||||||    
T  31013626 ttaagtaatgattattttctttgttctactacaaacttt 31013664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 31 - 163
Target Start/End: Original strand, 31833622 - 31833751
Alignment:
Q  31 ttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgtccttattattatttttaaaccttcactttt 130  Q
    |||||||||| ||||| |||||||||| ||||||||||||||||| | | ||||||||||||| ||||| ||   |||||||||| ||||||||| ||||    
T  31833622 ttgaccattttacacaaattaagaaaagtgtaaagatgaaagaaaaataatgatatttttactaaattgccc---ttattattttgaaaccttcattttt 31833718  T
Q  131 aaataatgattactttctttgttccactacaaa 163  Q
    || ||||||||| ||||||||||||||||||||    
T  31833719 aagtaatgattattttctttgttccactacaaa 31833751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 141
Target Start/End: Original strand, 17510202 - 17510309
Alignment:
Q  34 accatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgtccttattattatttttaaaccttcacttttaaa 133  Q
    ||||||||| |||| |||| |||| ||||||  | || |||||||| |||||||| |||| | |||||| |  ||||| || ||||  ||||||||||||    
T  17510202 accatttcatacagtttaaaaaaagtgtaaaagtaaatgaaagagaatgatatttatactaatttgtccctgctattaattgtaaaatttcacttttaaa 17510301  T
Q  134 taatgatt 141  Q
    ||||||||    
T  17510302 taatgatt 17510309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 92169 - 92338
Alignment:
Q  1 tactccctccgtccctgaataagtgatttat-tgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 99  Q
    |||||||||||| |||||||||||||  ||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||| | ||||||||| |||    
T  92169 tactccctccgttcctgaataagtgacctatgtgaccatttcacatagattaagaaaagtgtaaagatgaaagaaagagagtgacacttttactgagttg 92268  T
Q  100 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 167  Q
     |||| | |||||||| ||||   ||||||||||| ||||||||||||||||||||||||||||||||||    
T  92269 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaacttt 92338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 10593 - 10762
Alignment:
Q  1 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 99  Q
    ||||||||||||||||||||||||||  |||| ||||||| |||| | |||||||||| ||||||||||||||||||||||||||| ||||||||| |||    
T  10593 tactccctccgtccctgaataagtgacctatttgaccattccacataaattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttg 10692  T
Q  100 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 167  Q
     |||| | |||||||| ||||   ||||||||||| ||||||||| ||||||||||||||||||||||||    
T  10693 cccttgtcattattttgaaactttttcacttttaagtaatgattattttctttgttccactacaaacttt 10762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0532 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0532
Description:

Target: scaffold0532; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 4114 - 3945
Alignment:
Q  1 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 99  Q
    |||||||||||||||||||||| | || |||| |||||||||||||||||||||||||  |||||||||||| ||| |||| | || ||||||||| ||     
T  4114 tactccctccgtccctgaataaataatctatttgaccatttcacacagattaagaaaagggtaaagatgaaaaaaaaagagcgctacttttactgagtta 4015  T
Q  100 tccttattattatttttaaacctt--cacttttaaataatgattactttctttgttccactacaaacttt 167  Q
     |||| | |||||||| |||| ||  ||||||||| ||||||||||||||||||||||| ||||||||||    
T  4014 cccttgtcattattttaaaactttttcacttttaagtaatgattactttctttgttccattacaaacttt 3945  T

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Target: scaffold1194 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: scaffold1194
Description:

Target: scaffold1194; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 31 - 141
Target Start/End: Complemental strand, 1236 - 1127
Alignment:
Q  31 ttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgtccttattattatttttaaaccttcactttt 130  Q
    |||||||||||||||| ||||| | || ||||||||||||||||||||| |||||||||||||||||||  ||| |||||||||| ||||||||||||||    
T  1236 ttgaccatttcacacaaattaa-acaagtgtaaagatgaaagaaagagaatgatatttttactgaattgctcttgttattattttgaaaccttcactttt 1138  T
Q  131 aaataatgatt 141  Q
    || ||||||||    
T  1137 aagtaatgatt 1127  T

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Target: scaffold0318 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: scaffold0318
Description:

Target: scaffold0318; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 4 - 82
Target Start/End: Complemental strand, 16641 - 16562
Alignment:
Q  4 tccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtg 82  Q
    ||||||||||||| |||||||||  |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  16641 tccctccgtccctaaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtg 16562  T

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Target: scaffold0318; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 122 - 167
Target Start/End: Complemental strand, 16533 - 16488
Alignment:
Q  122 ttcacttttaaataatgattactttctttgttccactacaaacttt 167  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||    
T  16533 ttcacttttaagtaatgattactttctttgtttcactacaaacttt 16488  T

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Target: scaffold0685 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0685
Description:

Target: scaffold0685; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 80
Target Start/End: Original strand, 6352 - 6397
Alignment:
Q  35 ccatttcacacagattaagaaaaatgtaaagatgaaagaaagagag 80  Q
    |||||||||||||||||||||||||||| | | |||||| ||||||    
T  6352 ccatttcacacagattaagaaaaatgtataaaggaaagagagagag 6397  T

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Target: scaffold0250 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 79
Target Start/End: Complemental strand, 20611 - 20566
Alignment:
Q  34 accatttcacacagattaagaaaaatgtaaagatgaaagaaagaga 79  Q
    ||||||||||||||||||||||||||||| | ||| |||| |||||    
T  20611 accatttcacacagattaagaaaaatgtataaatggaagagagaga 20566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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