View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2817_low_9 (Length: 245)
Name: NF2817_low_9
Description: NF2817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2817_low_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 19 - 234
Target Start/End: Complemental strand, 42325848 - 42325633
Alignment:
| Q |
19 |
ctaatgtaacgtaattgcagcgtggagtggaacgaaagacatttggcttaaaagtggtttagccaatagtatgatttaagtgatcttatatagataaaag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
42325848 |
ctaatgtaacgtaattgcagcgtggagtggaacgaaagacatttggcttaaaagtggtttagccaatagtatgatttaagtgatctcatctagataaaag |
42325749 |
T |
|
| Q |
119 |
ccctatagctttagtagaaaagccggcaaatttccnnnnnnngtgttgagttaaaatgttaccaaccaaataannnnnnncaagcaatctatttttagtc |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
42325748 |
ccctatagctttagtagaaaagccggcaaatttccaaaaaaagtgttgagttaaaatgttaccaaccaaataatttttttcaagcaatctatttttagtc |
42325649 |
T |
|
| Q |
219 |
aagaccctaccttcat |
234 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
42325648 |
aagaccctaccttcat |
42325633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University