View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2818_high_4 (Length: 414)
Name: NF2818_high_4
Description: NF2818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2818_high_4 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Original strand, 18905590 - 18906006
Alignment:
| Q |
1 |
agatctttaccttcaccaaatccatccttgatctgcacgacaaaattttcaatcagtacaacgaggtgcaaattataaaagtcgacaatctcacgccaat |
100 |
Q |
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| T |
18905590 |
agatctttaccttcaccaaatccatccttgatctgcatgacaaaattttgaatcagtacaacgaggtgcaaattataaaagtcgacaatctcacgccaat |
18905689 |
T |
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| Q |
101 |
tttcattactaagacattgtttgataatgtgtttgcagcaagctattacacaacttacctggagattaagatagtaacgaactaataacaaattattaat |
200 |
Q |
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| T |
18905690 |
tttcattactaagaccttgtttgataatgtgtttgcagcaagctattacacaacttacctgcagattaagatagtaacaaactaataacaaattattaac |
18905789 |
T |
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| Q |
201 |
cgattacatctgtaacgaatgtcatgcaactattcaacacaacaagcaaatgtggtccagattatcgacaaactaacctgcgaaagcagagtttcatcgg |
300 |
Q |
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| T |
18905790 |
cgattacatctgtaacgaatgtcatgcaactattcaacacaacaagcaaatgtggtccagattatcgacaaactaacctgcgaaagcagagtttcatcgg |
18905889 |
T |
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| Q |
301 |
ttggaagcttaaggtcatccttagtaccaccacactcagtcagcagactcacctaacattcactg----aacataactcttagttcgcatttaattgaaa |
396 |
Q |
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| T |
18905890 |
taggaagcttaaggtcatccttagtaccaccactctcagtcagcaaactcacctaata-tcattggaaaaaaaaaatccctagttagcatttaattgaaa |
18905988 |
T |
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| Q |
397 |
agaatcacacaaccctaa |
414 |
Q |
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| T |
18905989 |
agaatcacacaaccctaa |
18906006 |
T |
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