View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2818_low_1 (Length: 617)
Name: NF2818_low_1
Description: NF2818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2818_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 297 - 600
Target Start/End: Complemental strand, 27803852 - 27803549
Alignment:
| Q |
297 |
catggatcacaaccctaccacctaattcgatcccaaactaggggcagtcataaaccatctttcatgaacaattccttaggggaaaaatgaaaataaatat |
396 |
Q |
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| T |
27803852 |
catggatcacaaccctaccacctaattcgatcccaaactaggggcagtcataaaccatctttcatgaataattctttagggggaaaatgaaaataaatat |
27803753 |
T |
|
| Q |
397 |
cattgagttgaccaagagtcgaa-aaaagatgatatatcattagataattacgaaagtgaatttagattaattaaatatagatgtatgacaataattctt |
495 |
Q |
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| T |
27803752 |
cattgagttggctaagaatcgaataaaagatgatatatcattagatgagcacgtaaggaaatttagattaattaaatctagatgtatgacaatgattctt |
27803653 |
T |
|
| Q |
496 |
tagtatgaattagtttaaatggctacaacatgctttaattatgcatttcaaaataaaatggttagccaacaacttcgcaatatatcttcattgggtagta |
595 |
Q |
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| T |
27803652 |
gagtatgaattagtttaaatggcta-aacatgctttaattatgcatttcaaaataaaatggttagccaacaacttcgcaatatatcttcattgggtaata |
27803554 |
T |
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| Q |
596 |
ttgtt |
600 |
Q |
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||||| |
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| T |
27803553 |
ttgtt |
27803549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 16 - 299
Target Start/End: Complemental strand, 27804150 - 27803878
Alignment:
| Q |
16 |
atcaaaatgcatttaggggcaccaagttagacaaaacatttgcgggtaccaagtaaaacatatggtcgaaaaaccttaaataagcacgatttcaatgtgg |
115 |
Q |
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| T |
27804150 |
atcaaaatgcatttaggggcatcaagttagacaaaacatttgggggcaccaagtaaaaaatatggt-----------aaataaacacagtttcaatgtgg |
27804062 |
T |
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| Q |
116 |
gatatgtgaacaaaccttactttgtctccctttccnnnnnnnnttgtgcaaatagaacttcctcaaagatataaagtttccaaatttaccaagttttcta |
215 |
Q |
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| T |
27804061 |
aatatgcgaaaaaaccttattttgtctccctttccgaaaaaaattgtgcaaatagaacttcctcaaagatataaagtttccaaatttaccaagttttcta |
27803962 |
T |
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| Q |
216 |
gtgaaccgggagaatccacaatagaacgtctggctaggaatcaacttaacgactgatggattgctaaaagtgaaatatttccat |
299 |
Q |
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| T |
27803961 |
gtgaaccgggagaatccacaatagaacatgtggctaggcatcaaattaacaaatgatggattgctaaaactgaaatatttccat |
27803878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 310 - 571
Target Start/End: Complemental strand, 27800450 - 27800188
Alignment:
| Q |
310 |
cctaccacctaattcgatcccaaactaggggcagtcataaaccatctttcatgaacaattccttaggggaaaaatgaaaataaatatcattgagttgacc |
409 |
Q |
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| T |
27800450 |
cctaccagcgaatttgatcctaaactaggggttgttataaaccatctttcatgaacaactctttagtggagaaatgaacataaatattatcgagttgaca |
27800351 |
T |
|
| Q |
410 |
aagagtcgaa-aaaagatgatatatcattagataattacgaaagtgaatttagattaattaaatatagatgtatgacaataattctttagtatgaattag |
508 |
Q |
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|||| || || ||||||||||| |||||||||| |||||| |||| ||||||||||||||| | ||||||||||||||| |||||| |||||||||||| |
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| T |
27800350 |
aagattcaaagaaaagatgatagatcattagatgattacgtaagtagatttagattaattaattctagatgtatgacaatgattcttgagtatgaattag |
27800251 |
T |
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| Q |
509 |
tttaaatggctacaacatgctttaattatgcatttcaaaataaaatggttagccaacaacttc |
571 |
Q |
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| T |
27800250 |
tttaaatggctagaacaagccttaagtaagtatttagaaagaaaatggttagctaagaacttc |
27800188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 35 - 264
Target Start/End: Complemental strand, 27800769 - 27800538
Alignment:
| Q |
35 |
caccaagttagacaaaacatttgcgggt-accaagtaaaacatatggtcgaaaaacct-taaataagcacgatttcaatgtgggatatgtgaacaaacct |
132 |
Q |
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|||||| |||||||||||||| | ||| ||||||| ||| ||| || ||||||| || |||| || || ||||||||||||||||||||||||||| || |
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| T |
27800769 |
caccaatttagacaaaacattgggggggcaccaagtcaaagatagggccgaaaaagctataaacaaacatgatttcaatgtgggatatgtgaacaaaact |
27800670 |
T |
|
| Q |
133 |
tactttgtctccctttccnnnnnnnnttgtgcaaatagaacttcctcaaagatataaagtttccaaatttaccaagttttctagtgaaccgggagaatcc |
232 |
Q |
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| T |
27800669 |
tattttgtcactatttccaaattttgttgtgcaaatagaacttcctcaaggatataaagttctcaaatttaccaagctttatggtgacttaggagaatcc |
27800570 |
T |
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| Q |
233 |
acaatagaacgtctggctaggaatcaacttaa |
264 |
Q |
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| T |
27800569 |
acaatataacatgtggctaggtatcaaattaa |
27800538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 140
Target Start/End: Original strand, 38644554 - 38644591
Alignment:
| Q |
103 |
gatttcaatgtgggatatgtgaacaaaccttactttgt |
140 |
Q |
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| T |
38644554 |
gatttcaatgtgggatatatgaacaaaccttattttgt |
38644591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 474 - 571
Target Start/End: Original strand, 23955930 - 23956027
Alignment:
| Q |
474 |
tagatgtatgacaataattctttagtatgaattagtttaaatggctacaacatgctttaattatgcatttcaaaataaaatggttagccaacaacttc |
571 |
Q |
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| T |
23955930 |
tagatgtatcacaatgattcctgaacatgaattggtttaaatggctgcaacataccttaattatgcagttcgaaagaaaatggttagccaacaacttc |
23956027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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