View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2818_low_10 (Length: 304)
Name: NF2818_low_10
Description: NF2818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2818_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 48 - 287
Target Start/End: Original strand, 11655285 - 11655524
Alignment:
| Q |
48 |
ttttatgttaaacacaatgaattgcagagtgtgacaaaccaggagctgtttgccaagaccctcgtttcattggtggtgatggaatcactttttacttcca |
147 |
Q |
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| T |
11655285 |
ttttatgttgaacacaatgaattgcagagtgtgacaaaccaggagctgtttgccaagaccctcgtttcattggtggagatggaatcactttttacttcca |
11655384 |
T |
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| Q |
148 |
tggcaagaaagacaacaacttctgccttgtttctgataacaacctccacatcaatgcccatttcataggtagaagaaacgagaacatgaaaagagacttc |
247 |
Q |
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| T |
11655385 |
tggcaagaaagacaacaacttctgccttgtttctgacaaaaacctacacatcaatgctcatttcataggtagaagaaacgagaacatgaaaagagacttc |
11655484 |
T |
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| Q |
248 |
acatgggtccaatccattgttattctctttgacaatcacc |
287 |
Q |
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| T |
11655485 |
acatgggtccaatccattgttattctctttgacaatcacc |
11655524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 48 - 287
Target Start/End: Original strand, 11669053 - 11669292
Alignment:
| Q |
48 |
ttttatgttaaacacaatgaattgcagagtgtgacaaaccaggagctgtttgccaagaccctcgtttcattggtggtgatggaatcactttttacttcca |
147 |
Q |
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| T |
11669053 |
ttttatgttgaacacaatgaattgcagagtgtgacaaaccaggagctgtttgccaagaccctcgtttcattggtggagatggaatcactttttacttcca |
11669152 |
T |
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| Q |
148 |
tggcaagaaagacaacaacttctgccttgtttctgataacaacctccacatcaatgcccatttcataggtagaagaaacgagaacatgaaaagagacttc |
247 |
Q |
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| T |
11669153 |
tggcaagaaagacaacaacttctgccttgtttctgacaaaaacctacacatcaatgctcatttcataggtagaagaaacgagaacatgaaaagagacttc |
11669252 |
T |
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| Q |
248 |
acatgggtccaatccattgttattctctttgacaatcacc |
287 |
Q |
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| T |
11669253 |
acatgggtccaatccattgttattctctttgacaatcacc |
11669292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 65 - 287
Target Start/End: Original strand, 11663759 - 11663981
Alignment:
| Q |
65 |
tgaattgcagagtgtgacaaaccaggagctgtttgccaagaccctcgtttcattggtggtgatggaatcactttttacttccatggcaagaaagacaaca |
164 |
Q |
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| T |
11663759 |
tgaattgcagcttgtgacaaaccaggagctgtttgccaagaccctcgtttcattggtggtgatggaatcactttttactttcatggcaagaaagacaaca |
11663858 |
T |
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| Q |
165 |
acttctgccttgtttctgataacaacctccacatcaatgcccatttcataggtagaagaaacgagaacatgaaaagagacttcacatgggtccaatccat |
264 |
Q |
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| T |
11663859 |
acttctgccttgtttctgataacaacctccacatcaatgctcatttcataggtagaagaaatgagaacatgaaaagagacttcacatgggtccaatccat |
11663958 |
T |
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| Q |
265 |
tgttattctctttgacaatcacc |
287 |
Q |
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| T |
11663959 |
tgttattctctttgacaatcacc |
11663981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 64 - 287
Target Start/End: Complemental strand, 7344738 - 7344515
Alignment:
| Q |
64 |
atgaattgcagagtgtgacaaaccaggagctgtttgccaagaccctcgtttcattggtggtgatggaatcactttttacttccatggcaagaaagacaac |
163 |
Q |
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| T |
7344738 |
atgaattgcagcgtgtgacaaaccaggagcggtttgccaagaccctcgtttcattggtggtgatggaatcactttttacttccatggcaagaaagacaac |
7344639 |
T |
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| Q |
164 |
aacttctgccttgtttctgataacaacctccacatcaatgcccatttcataggtagaagaaacgagaacatgaaaagagacttcacatgggtccaatcca |
263 |
Q |
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| T |
7344638 |
aacttctgccttgtttccgataacaacctccacataaacgctcacttcattggtagaagaaacaagaacatgaaaagagacttcacatgggtacaatcca |
7344539 |
T |
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| Q |
264 |
ttgttattctctttgacaatcacc |
287 |
Q |
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| T |
7344538 |
ttgttattctctttgacaatcacc |
7344515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 6 - 57
Target Start/End: Complemental strand, 11653324 - 11653273
Alignment:
| Q |
6 |
ctccaataatatacatgtcaaatttcacatttactttctaagttttatgtta |
57 |
Q |
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| T |
11653324 |
ctccaataatatacatgtcaaatttcacatttactttctaagttttatgtta |
11653273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 6 - 57
Target Start/End: Complemental strand, 20957813 - 20957762
Alignment:
| Q |
6 |
ctccaataatatacatgtcaaatttcacatttactttctaagttttatgtta |
57 |
Q |
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| T |
20957813 |
ctccaataatacacacgtcaaattttacatttactttctaagttttatgtta |
20957762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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