View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2818_low_11 (Length: 278)
Name: NF2818_low_11
Description: NF2818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2818_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 4 - 259
Target Start/End: Original strand, 5984855 - 5985110
Alignment:
| Q |
4 |
ctgatcttggaattccctttggttctgcactcaatgatgctgttcgtttgagctatgttgcgcatcttgtgcttgtatttcctgtagttttctatgcatt |
103 |
Q |
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||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||| |
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| T |
5984855 |
ctgatcttggaattcccttcggttctgcgctcaatgatgctgttcgtttgagctatgctgcgcatcttgtccttgtatttcctgtaattttctatgcatt |
5984954 |
T |
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| Q |
104 |
gagggtcaacttagatggtctaatattttcctcatcaagaagacctttggttgttgataacttcagatttgcatcaattactatttcccttgttggcatt |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5984955 |
gagggtcaacttagatggtctaatattttcctcatcaagaagacctttggttgttgataacttcagatttgcatcaattactatttcccttgttggcatt |
5985054 |
T |
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| Q |
204 |
atcttcctcggagcaaatttcataccgaacatttgggttattttccagttgactgg |
259 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
5985055 |
atcttcctcggagcaaatttcataccgaacatttgggttattttccagttcactgg |
5985110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 4 - 253
Target Start/End: Original strand, 5963713 - 5963962
Alignment:
| Q |
4 |
ctgatcttggaattccctttggttctgcactcaatgatgctgttcgtttgagctatgttgcgcatcttgtgcttgtatttcctgtagttttctatgcatt |
103 |
Q |
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||||| |||||||||| ||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5963713 |
ctgattttggaattccttttggttctgctcttaatgatgctgttcgttttagctatgttgcgcatcttgtgcttgtatttcctgtagttttctatgcatt |
5963812 |
T |
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| Q |
104 |
gagggtcaacttagatggtctaatattttcctcatcaagaagacctttggttgttgataacttcagatttgcatcaattactatttcccttgttggcatt |
203 |
Q |
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| T |
5963813 |
gagggtcaacatagatggtctcatattttcctcttcgagaaggcctttggttgttgataacttcagatttgcatcaattactattgcccttgttggcact |
5963912 |
T |
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| Q |
204 |
atcttcctcggagcaaatttcataccgaacatttgggttattttccagtt |
253 |
Q |
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||||||||||| |||||||||||||| | ||||||||||||||||||||| |
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| T |
5963913 |
atcttcctcggggcaaatttcatacctagcatttgggttattttccagtt |
5963962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 4 - 259
Target Start/End: Original strand, 5968846 - 5969101
Alignment:
| Q |
4 |
ctgatcttggaattccctttggttctgcactcaatgatgctgttcgtttgagctatgttgcgcatcttgtgcttgtatttcctgtagttttctatgcatt |
103 |
Q |
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||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| || |
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| T |
5968846 |
ctgatcttggaattcccttcggttttgcgctcaatgatgctgttcgtttgagctatgctgcgcatcttgtgcttgtatttcctgtaattttctatgcgtt |
5968945 |
T |
|
| Q |
104 |
gagggtcaacttagatggtctaatattttcctcatcaagaagacctttggttgttgataacttcagatttgcatcaattactatttcccttgttggcatt |
203 |
Q |
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|||| ||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||| ||||| |||||||| || ||||| ||| |
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| T |
5968946 |
gaggctcaacgtagatggtctgatattttcctcatcaagaaggcctttggttgttgataacttaagattttcatcagttactattgcctttgttcttatt |
5969045 |
T |
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| Q |
204 |
atcttcctcggagcaaatttcataccgaacatttgggttattttccagttgactgg |
259 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
5969046 |
atcttcctcggagcaaatttcataccgaacatttgggttattttccagttcactgg |
5969101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 4 - 259
Target Start/End: Complemental strand, 8715301 - 8715046
Alignment:
| Q |
4 |
ctgatcttggaattccctttggttctgcactcaatgatgctgttcgtttgagctatgttgcgcatcttgtgcttgtatttcctgtagttttctatgcatt |
103 |
Q |
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|
||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| || || |
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| T |
8715301 |
ctgatcttggaattcccttcggttgtgcgctcaatgatgctgttcgtttgagctatgctgcgcatcttgtgcttgtatttcctgtaattttctaagcgtt |
8715202 |
T |
|
| Q |
104 |
gagggtcaacttagatggtctaatattttcctcatcaagaagacctttggttgttgataacttcagatttgcatcaattactatttcccttgttggcatt |
203 |
Q |
| |
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|||| ||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||| ||||| |||||||| || ||||| ||| |
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| T |
8715201 |
gaggctcaacgtagatggtctgatattttcctcatcaagaaggcctttggttgttgataacttaagattttcatcagttactattgccattgttctaatt |
8715102 |
T |
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| Q |
204 |
atcttcctcggagcaaatttcataccgaacatttgggttattttccagttgactgg |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
8715101 |
atcttcctcggagcaaatttcataccgaacatttgggttattttccagttcactgg |
8715046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 7 - 259
Target Start/End: Original strand, 5935319 - 5935571
Alignment:
| Q |
7 |
atcttggaattccctttggttctgcactcaatgatgctgttcgtttgagctatgttgcgcatcttgtgcttgtatttcctgtagttttctatgcattgag |
106 |
Q |
| |
|
|||| |||||||| ||||||||||| |||||||||||||||||||| ||||||| ||||||||| || |||||||||||||||||||||||||||||||| |
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| T |
5935319 |
atctcggaattccttttggttctgcgctcaatgatgctgttcgttttagctatgctgcgcatctcgtacttgtatttcctgtagttttctatgcattgag |
5935418 |
T |
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| Q |
107 |
ggtcaacttagatggtctaatattttcctcatcaagaagacctttggttgttgataacttcagatttgcatcaattactatttcccttgttggcattatc |
206 |
Q |
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||||||| |||||||||| |||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||| | ||||| ||||||||| |
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| T |
5935419 |
ggtcaacatagatggtctgatatttacctcatcaagaaggcctttggttgttgataacttacgatttgcatcaattactattgcgcttgtcggcattatc |
5935518 |
T |
|
| Q |
207 |
ttcctcggagcaaatttcataccgaacatttgggttattttccagttgactgg |
259 |
Q |
| |
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||| | |||||||| ||||| || | |||||||| | |||||||||| ||||| |
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| T |
5935519 |
ttcatgggagcaaacttcatccctagcatttgggatcttttccagttcactgg |
5935571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 5628170 - 5627915
Alignment:
| Q |
1 |
atgctgatcttggaattccctttggttctgcactcaatgatgctgttcgtttgagctatgttgcgcatcttgtgcttgtatttcctgtagttttctatgc |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||| |||||||||||| | ||||||| ||| || || ||||||||||||| || || || | | |
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| T |
5628170 |
atgctgatcttggaattccttttggttctttgctcaacgatgctgttcgtattagctatgctgcacacctcatgcttgtatttccagttgtgtttttccc |
5628071 |
T |
|
| Q |
101 |
attgagggtcaacttagatggtctaatattttcctcatcaagaagacctttggttgttgataacttcagatttgcatcaattactatttcccttgttggc |
200 |
Q |
| |
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|||| | |||| |||||||||| | || | ||| ||||||||||||| | ||||||||||||||||||||||| ||| |||||||| |||| |
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| T |
5628070 |
attgcgactcaatatagatggtcttctcttccctaaatc---aagacctttggttctggataacttcagatttgcatcaatgactgtttcccttattggt |
5627974 |
T |
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| Q |
201 |
attatcttcctcggagcaaatttcataccgaacatttgggttattttccagttgactgg |
259 |
Q |
| |
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|||||||| | ||||||||||||||||| | |||||||| | ||||||||| ||||| |
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|
| T |
5627973 |
gttatcttcttgggagcaaatttcatacctagcatttgggatgctttccagttcactgg |
5627915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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