View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2818_low_12 (Length: 256)
Name: NF2818_low_12
Description: NF2818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2818_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 5288674 - 5288429
Alignment:
| Q |
1 |
tctttttattagaagtttggtgtgatcatctatctatttgttgttcttcccaataacaattcatgttggaccaaaccttcaattaaccgtctcgttatca |
100 |
Q |
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| T |
5288674 |
tctttttattagaagtttggtgtgatcatctatctatttgttgttcttcccaataacaattcatgttggaccaaaccttcaattaaccgtctcgttatca |
5288575 |
T |
|
| Q |
101 |
tcgttctcgatactctcatgtactcaacactcgtcgatcgcaaccaccattaccaatttaccattaattaactgtgttatgctatatttttaggtttgat |
200 |
Q |
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| T |
5288574 |
tcgttctcgatactctcatgtactcaacactcgtcgatcgcaaccaccattaccaatttacgattaattaactgtgttatgctatatttttaggtttgat |
5288475 |
T |
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| Q |
201 |
tttgttgctcccagtaccttctttcaaggttagttactgatctctg |
246 |
Q |
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| T |
5288474 |
tttgttgctcccagtaccttctttcaaggttagttactgatctctg |
5288429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 11 - 246
Target Start/End: Original strand, 8034753 - 8034984
Alignment:
| Q |
11 |
agaagtttggtgtgatcatctatctatttgttgttcttcccaataacaattcatgttggaccaaaccttcaattaaccgtctcgttatcatcgttctcga |
110 |
Q |
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| T |
8034753 |
agaagtttggtgtgatcatctatctatttgttgttcttctcc----caattcctgttggaccaaacctttaattaaccgtctcgttaccatcgttcccga |
8034848 |
T |
|
| Q |
111 |
tactctcatgtactcaacactcgtcgatcgcaaccaccattaccaatttaccattaattaactgtgttatgctatatttttaggtttgattttgttgctc |
210 |
Q |
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| T |
8034849 |
tgctctcaagtattcaacactcgttgatcacaaccaccattatcaatttacaattaattaactgtgttatgctatgttcttaggtttgattttgttgctc |
8034948 |
T |
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| Q |
211 |
ccagtaccttctttcaaggttagttactgatctctg |
246 |
Q |
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| T |
8034949 |
ccagtaccttctttcaaggttggttactgatctctg |
8034984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 67 - 236
Target Start/End: Complemental strand, 51380273 - 51380100
Alignment:
| Q |
67 |
tggaccaaaccttcaattaaccgtctcgttatcatcgttctcgatactctcatgtactcaacact----cgtcgatcgca---accaccattaccaattt |
159 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||| |||| | |||||||||||| |||| |||||| |||| |||||||||||| |
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| T |
51380273 |
tggaccaaacctgcaattaaccgtctcgttatcatcgttctcgatgctcttaggtactcaacactcgtccgtccatcgcaactaccagcattaccaattt |
51380174 |
T |
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| Q |
160 |
accattaattaactgtgttatgctatatttttaggtttgattttgttgctcccagtaccttctttcaaggttagtta |
236 |
Q |
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| T |
51380173 |
tccattaattaac--tttttttctgt-gttttaggtttgattttgttgctcccagtaccttctttcaaggttagtta |
51380100 |
T |
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