View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2818_low_14 (Length: 237)
Name: NF2818_low_14
Description: NF2818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2818_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 5288701 - 5288922
Alignment:
| Q |
1 |
ttccttgacaaaatataatgaatgacatggaacacttaaaaagaacacaagatatcaaaattgactttaatttgtttcaaagacatattggcacaa-caa |
99 |
Q |
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| T |
5288701 |
ttccctgacaaaatataatgaatgacatggaacacttaaaaagaacacaagatatcaaaattgactttaatttgtttcaaagacatattggcacaaacaa |
5288800 |
T |
|
| Q |
100 |
atataggattgtacatggtatttgcacatcaacatgtttgctgctatattcagaatctgttatgcagatttctacttcatccttacatcaaagttaaaca |
199 |
Q |
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| T |
5288801 |
atataggattgtacatggtatttgcacatcaacatgtttgctgctatattcagaatctgttatgcagatttctacttcatccttacataaaagttaaaca |
5288900 |
T |
|
| Q |
200 |
aatttgaaatcaatgaaaataa |
221 |
Q |
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|||||||||||||||||||||| |
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| T |
5288901 |
aatttgaaatcaatgaaaataa |
5288922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 38 - 131
Target Start/End: Complemental strand, 42965981 - 42965887
Alignment:
| Q |
38 |
aaaaagaacacaagatatcaaaattgactttaatttgtttcaaagacat-attggcacaacaaatataggattgtacatggtatttgcacatcaa |
131 |
Q |
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| T |
42965981 |
aaaacgaatacaagctatctaaattgactttaatttgtttcaaagacatgattggcacaacaaatataggactgcccatgatatttgcacatcaa |
42965887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 37
Target Start/End: Complemental strand, 42966030 - 42965997
Alignment:
| Q |
4 |
cttgacaaaatataatgaatgacatggaacactt |
37 |
Q |
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| T |
42966030 |
cttgacaaaatataataaatgacatggaacactt |
42965997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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