View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2818_low_2 (Length: 581)
Name: NF2818_low_2
Description: NF2818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2818_low_2 |
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| [»] scaffold0141 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 8413531 - 8413333
Alignment:
| Q |
1 |
caaaacaacaacaccttcttctcttgtcgttacgacacgtcgttttagaaaacactttgttgtttcttctgaacaagccacggttgattctcctgctctt |
100 |
Q |
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| T |
8413531 |
caaaacaacaacaccttcttctcttgtcgttacgacacgtcgttttagaaaacactttgttgtttcttctgaacaagccacggttgattctcctgctctt |
8413432 |
T |
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| Q |
101 |
agaaaactctacgttggtaacattcctcgtactgttagtaatgatgaacttgagaagattgttcaagaacatggtgctgttgaaaaagctgaggtactc |
199 |
Q |
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| T |
8413431 |
agaaaactctacgttggtaacattcctcgtactgttagtaatgatgaacttgagaaaattgttcaagaacatggtgctgttgaaaaagctgaggtactc |
8413333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 467 - 575
Target Start/End: Complemental strand, 8413122 - 8413015
Alignment:
| Q |
467 |
cagttccagcttaacccgaagttctggattctaattcagtaatgaaatgtagtggtgttagatctcttgtaggggagtttgcagctcaatgaagcacgga |
566 |
Q |
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| T |
8413122 |
cagttccagcttaaccggaggttctggattcgaatt-agtaatgaaatgtagtggtgttagatctcttgtaggggagtttgccgctcaatgaagcacgga |
8413024 |
T |
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| Q |
567 |
caccggaca |
575 |
Q |
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| T |
8413023 |
caccggaca |
8413015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 337 - 395
Target Start/End: Complemental strand, 8413182 - 8413124
Alignment:
| Q |
337 |
gtaaattttcttaaatgtgtgtgttacaaaatgtaatttgtttgagcaagagcggtggt |
395 |
Q |
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| T |
8413182 |
gtaaattttcttaaatgtgtgtgttacaaaatgtaatttgtttgaccaagagcggtggt |
8413124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 396 - 466
Target Start/End: Original strand, 27299917 - 27299987
Alignment:
| Q |
396 |
accgcaaaccggttcgcgcgaaccaattcgcggttcgccggtcaacccaacgaattctgtaactatggtcc |
466 |
Q |
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| T |
27299917 |
accgctaatcggttcgcgagaaccaattcgcggttcgccactcaacccagcgaattatgtgactctggtcc |
27299987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 405 - 451
Target Start/End: Complemental strand, 37059347 - 37059301
Alignment:
| Q |
405 |
cggttcgcgcgaaccaattcgcggttcgccggtcaacccaacgaatt |
451 |
Q |
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| T |
37059347 |
cggtttgcgcgaaccaattcgcggttcgccactcaacccagcgaatt |
37059301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 431
Target Start/End: Complemental strand, 8427326 - 8427297
Alignment:
| Q |
402 |
aaccggttcgcgcgaaccaattcgcggttc |
431 |
Q |
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| T |
8427326 |
aaccggttcgcgcgaaccaattcgcggttc |
8427297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0141 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0141
Description:
Target: scaffold0141; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 431
Target Start/End: Original strand, 9535 - 9564
Alignment:
| Q |
402 |
aaccggttcgcgcgaaccaattcgcggttc |
431 |
Q |
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| T |
9535 |
aaccggttcgcgcgaaccaattcgcggttc |
9564 |
T |
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