View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2818_low_3 (Length: 526)
Name: NF2818_low_3
Description: NF2818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2818_low_3 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 1e-97; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 317 - 508
Target Start/End: Original strand, 42169271 - 42169463
Alignment:
| Q |
317 |
ggcagagtgcatgcaatatgaggcaagcaggtatagtgaacatggctgagttacttgagaagcagttagcttcagagttgtcaaagatgtcattagaaga |
416 |
Q |
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| T |
42169271 |
ggcagagtgcatgcaatatgaggcaagcaggtatagtgaacatggctgagttacttgagaagcagttagcttcagatttgtcaaagatgtcattagaaga |
42169370 |
T |
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| Q |
417 |
agctttcactcttgctcgtgctttcagccattatcttactatgatgggtatagctgaaactcaccataggtaat-aataatccatggctacac |
508 |
Q |
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| T |
42169371 |
agctttcactcttgctcgtgctttcagccattatcttactatgatgggtatagctgaaactcaccataggtaataaataatccatggctacac |
42169463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 19 - 109
Target Start/End: Original strand, 42169038 - 42169128
Alignment:
| Q |
19 |
ggtaccacctttgttgacaaactcgaaagaattcgtgtccttgctcaggtaactaaaaattcaaacttttctctttctcttcataccccac |
109 |
Q |
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| T |
42169038 |
ggtaccacctttgttgacaaactcgaaagaattcgtgtccttgctcaggtaactaaaaattcaaacttttctctttctcttcataccccac |
42169128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 202 - 244
Target Start/End: Original strand, 42169174 - 42169216
Alignment:
| Q |
202 |
ttttcccccttgctgaatgtgaaaatctatgaagcactgacac |
244 |
Q |
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| T |
42169174 |
ttttcccccttgcttaatgtgaaaatctatgaagcactgacac |
42169216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 299
Target Start/End: Original strand, 42169212 - 42169253
Alignment:
| Q |
258 |
gacacgcctttgataagtgagtgctagtgaatgatgtttcta |
299 |
Q |
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| T |
42169212 |
gacacgcctttcataagtgagtaatagtgaatgatgtttcta |
42169253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 88; Significance: 5e-42; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 317 - 420
Target Start/End: Complemental strand, 21686150 - 21686047
Alignment:
| Q |
317 |
ggcagagtgcatgcaatatgaggcaagcaggtatagtgaacatggctgagttacttgagaagcagttagcttcagagttgtcaaagatgtcattagaaga |
416 |
Q |
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| T |
21686150 |
ggcagagtggatgtaatatgaggcaagcaggtatagtgaacatggctgagttaattgagaagcagttagcttcagagttgtcaaagatgtctttagaaga |
21686051 |
T |
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| Q |
417 |
agct |
420 |
Q |
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|||| |
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| T |
21686050 |
agct |
21686047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 444 - 493
Target Start/End: Complemental strand, 7725600 - 7725551
Alignment:
| Q |
444 |
ccattatcttactatgatgggtatagctgaaactcaccataggtaataat |
493 |
Q |
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| T |
7725600 |
ccattatcttactgtgactgatatagctgaaactcaccataggtaataat |
7725551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 373 - 479
Target Start/End: Original strand, 333841 - 333947
Alignment:
| Q |
373 |
gagaagcagttagcttcagagttgtcaaagatgtcattagaagaagctttcactcttgctcgtgctttcagccattatcttactatgatgggtatagctg |
472 |
Q |
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||||||||||| ||||||||||| || |||||| |||||||||||| || ||||||||||| ||||| || ||||||||||||||| | ||||||| |
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| T |
333841 |
gagaagcagttggcttcagagttatccaagatgaacttagaagaagctcaaacacttgctcgtgcattcagtcactatcttactatgatgagcatagctg |
333940 |
T |
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| Q |
473 |
aaactca |
479 |
Q |
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| T |
333941 |
aaactca |
333947 |
T |
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