View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2818_low_5 (Length: 442)
Name: NF2818_low_5
Description: NF2818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2818_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 7e-90; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 13 - 204
Target Start/End: Original strand, 3002497 - 3002687
Alignment:
| Q |
13 |
atcaactttcataccaccatgattagagatctcgatacaccgactaagtgacaactctaagagcgtaggatatttctatgatatcaagatcaatacatta |
112 |
Q |
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| T |
3002497 |
atcaactttcataccaccatgattagagatctcgatacaccgattaagtgacaactctaagagcgtaggatatttctatgatatcaagaccaatacatta |
3002596 |
T |
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| Q |
113 |
tcgtcaacaacaatccttgatatcactaatacaaaaaacacttattagtttaaggatattaaaaaagttgggtgtaaggtaagtttttgact |
204 |
Q |
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| T |
3002597 |
tcgtcaacaacaatccttggtatcactaatacaaaaaacacttattagttcaaggatatt-aaaaagttgggtgtaaggtaagtttttgact |
3002687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 240 - 423
Target Start/End: Original strand, 3002685 - 3002869
Alignment:
| Q |
240 |
actatttatcaaaagtaagctaaaatacaaagttccaaaaccaaatgtaaagcgccaaactataatacaaagtgtctctcaccaaaacaattcactcagc |
339 |
Q |
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| T |
3002685 |
actatttattaaaagtaagccaaaatacaaagttccaagaccaaatggaaagcgccaaactaaaatacaaagtgcctcccaccaaaacaattcactcagc |
3002784 |
T |
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| Q |
340 |
aaaagggccaaacacataaaactc-nnnnnnntttcactcaccaaaaatttccctttaccatattcaaatctctctcctccatcg |
423 |
Q |
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| T |
3002785 |
aaaagagccaaacacataaaactcaacaaaaatttcactcaccaaaaattcccctttaccatagccaaatctctctcctccatcg |
3002869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 174 - 253
Target Start/End: Complemental strand, 7653995 - 7653916
Alignment:
| Q |
174 |
aaaaagttgggtgtaaggtaagtttttgacttcaaataatattaaattgtttgaccctatttaaaaactatttatcaaaa |
253 |
Q |
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| T |
7653995 |
aaaaagctgggtgtaaggaaagtttttaacttctaatggtattaaattgttttatcccatttaaaaactatttatcaaaa |
7653916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 174 - 253
Target Start/End: Complemental strand, 20593063 - 20592984
Alignment:
| Q |
174 |
aaaaagttgggtgtaaggtaagtttttgacttcaaataatattaaattgtttgaccctatttaaaaactatttatcaaaa |
253 |
Q |
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| T |
20593063 |
aaaaagctgggtgtaaggaaagtttttaactactaatgatattaaattgtttcaccccatttaaaaactatttatcaaaa |
20592984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 174 - 253
Target Start/End: Complemental strand, 40647206 - 40647127
Alignment:
| Q |
174 |
aaaaagttgggtgtaaggtaagtttttgacttcaaataatattaaattgtttgaccctatttaaaaactatttatcaaaa |
253 |
Q |
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| T |
40647206 |
aaaaagctgggtgtaatggaaatttttaacttctaatgatattaaattgtttcaccccatttaaaaactatttatcaaaa |
40647127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 181 - 253
Target Start/End: Original strand, 22620184 - 22620256
Alignment:
| Q |
181 |
tgggtgtaaggtaagtttttgacttcaaataatattaaattgtttgaccctatttaaaaactatttatcaaaa |
253 |
Q |
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| T |
22620184 |
tgggtgtaagaaaagtttttaacttctaatgatattaaattgtttcatcccatttaaaaactatttattaaaa |
22620256 |
T |
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