View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2818_low_8 (Length: 410)
Name: NF2818_low_8
Description: NF2818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2818_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 13 - 391
Target Start/End: Original strand, 46108389 - 46108767
Alignment:
| Q |
13 |
cagatacgtaccaagatatctacatacttccttccaactattactataatccttgctggagcgctctttgtagttctgcgatctttgccggtgatatttt |
112 |
Q |
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| T |
46108389 |
cagatacgtaccaagatatctacatacttccttccaactattactataatccttgctggagcgctctttgtagttctgcgatctttgccggtgatatttt |
46108488 |
T |
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| Q |
113 |
tgccacaacatacattggatggccgggatggaatactggatgaaccatatgatattttggccccaattaaggtttgtatatacttaaaattaacttttac |
212 |
Q |
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| T |
46108489 |
tgccacaacatacattggatggccgggatggaatactggatgaaccatatgatattttggccccaattaaggtttgcatatacttaaaattaacttttac |
46108588 |
T |
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| Q |
213 |
atataattaaggagtatagtgttatgtcattaattattgacggccttgaacttctttgcattacttttctcatgttgtattcatattttatcttttctcc |
312 |
Q |
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||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46108589 |
atataattaaggactatagtgttatgtcagtaattattgacggccttgaacttctttgcattacttttctcatgttgtattcatattttatcttttctcc |
46108688 |
T |
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| Q |
313 |
aggaatattatggttgggggaaaattaccattattagagacccaaattatatccctaatcacaaattcgctgatcgtga |
391 |
Q |
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| T |
46108689 |
aggaatattatggttgggggaaaattaccattattagagacccaaattatatccctaatcacaaattcgctgatcgtga |
46108767 |
T |
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