View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2819_high_6 (Length: 238)
Name: NF2819_high_6
Description: NF2819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2819_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 17 - 207
Target Start/End: Original strand, 33517729 - 33517919
Alignment:
| Q |
17 |
agtttactctttaaaatctgaatgattgtttttgacaggaagatatcaaattgatgtcatcacttgggataaatgtatatagattttcaatttcatggac |
116 |
Q |
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| T |
33517729 |
agtttactctttaaaatctgaatgattgtttttgacaggaagatatcaaattgatgtcatcacttgggataaatgtatatagattttcaatttcatggac |
33517828 |
T |
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| Q |
117 |
taggattttacctagtaagtattctccaattattcacaaaactagtttccacaattttatctttcaaattagattcttaattaagtctttg |
207 |
Q |
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| T |
33517829 |
taggattttacctagtaagtattctccaattattcacaaaactagtttccacaattttatctttcaaattagattcttaattaagtctttg |
33517919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 17 - 207
Target Start/End: Complemental strand, 33499292 - 33499106
Alignment:
| Q |
17 |
agtttactctttaaaatctgaatgattgtttttgacaggaagatatcaaattgatgtcatcacttgggataaatgtatatagattttcaatttcatggac |
116 |
Q |
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| T |
33499292 |
agtttactctttaaaatctgaatgattgtttttgacaggaagatatcaaattgatgtcatcacttgggataaatgtatatagattttcaatttcatggtc |
33499193 |
T |
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| Q |
117 |
taggattttacctagtaagtattctccaattattcacaaaactagtttccacaattttatctttcaaattagattcttaattaagtctttg |
207 |
Q |
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| T |
33499192 |
tagaattctacctagtaagtattcccc---gattcacataactag-ttccacaattttatctttcaaattagattcttaattaagtctttg |
33499106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 25 - 200
Target Start/End: Original strand, 11555661 - 11555819
Alignment:
| Q |
25 |
ctttaaaatctgaatgattgtttttgacaggaagatatcaaattgatgtcatcacttgggataaatgtatatagattttcaatttcatggactaggattt |
124 |
Q |
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| T |
11555661 |
ctttaaagtctgaatgattgtctttgacatgaagatatcaaattgatgtcatcact--------------atagattttcaatttcatggactaggattc |
11555746 |
T |
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| Q |
125 |
tacctagtaagtattctccaattattcacaaaactagtttccacaattttatctttcaaattagattcttaattaa |
200 |
Q |
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| T |
11555747 |
tacctagtaagtatt---ccatgattcacataattagttgccagaatcttatatttcaaattatattcttaattaa |
11555819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 56 - 140
Target Start/End: Complemental strand, 45102692 - 45102608
Alignment:
| Q |
56 |
aagatatcaaattgatgtcatcacttgggataaatgtatatagattttcaatttcatggactaggattttacctagtaagtattc |
140 |
Q |
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| T |
45102692 |
aagatatcaaattgatgtcatcacttggggtaaatgtatatagattttcaatttaatggactaggattctacctagtaagtattc |
45102608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 201
Target Start/End: Complemental strand, 45102608 - 45102573
Alignment:
| Q |
166 |
cacaattttatctttcaaattagattcttaattaag |
201 |
Q |
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| T |
45102608 |
cacaattttatctttcaaattagattcttaattaag |
45102573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 76 - 207
Target Start/End: Original strand, 34307831 - 34307964
Alignment:
| Q |
76 |
tcacttgggataaatgtatatagattttcaatttcatggactaggattttacctagtaagtattctccaattattcacaaaac-----tagtttccacaa |
170 |
Q |
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| T |
34307831 |
tcacttggggtaaatgtatatagattgtcaatttcatggactaggattctacccagtaagtattcgc---tgattcacataactttttttttttccacaa |
34307927 |
T |
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| Q |
171 |
ttttatctttcaaattagattcttaattaagtctttg |
207 |
Q |
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| T |
34307928 |
ttttatttttcaaattagattcttaattaagtctttg |
34307964 |
T |
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