View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2819_low_1 (Length: 568)
Name: NF2819_low_1
Description: NF2819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2819_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 365; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 18 - 386
Target Start/End: Original strand, 43798959 - 43799327
Alignment:
| Q |
18 |
cttctatcaagctatcaagcttaatccgccgcacccatgcacctcacaaaattcaaaagaagctttcatactcctcctcttcctccaccttcgaggagga |
117 |
Q |
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| T |
43798959 |
cttctatcaagctatcaagcttaatccgccgcacccatgcacctcacaaaattcaaaagaagctttcatactcctcctcttcctccaccttcgaggagga |
43799058 |
T |
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| Q |
118 |
ggaggggaataagttactatcgcttgttaatatatataagagggctgagtacacggtggctgaggaggaggattacggtgacctcctgtgtgagcaatgt |
217 |
Q |
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| T |
43799059 |
ggaggggaataagttactatcgcttgttaatatatataagagggctgagtacacggtgggtgaggaggaggattacggtgacctcctgtgtgagcaatgt |
43799158 |
T |
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| Q |
218 |
gggtccggtgaacaaccggaggagctgcttttgtgtgacaaatgtgacaatggttttcatatgaaatgtgtcagaccaattgttgttcgagttccgattg |
317 |
Q |
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| T |
43799159 |
gggtccggtgaacaaccggaggagctgcttttgtgtgacaaatgtgacaatggttttcatatgaaatgtgtcagaccaattgttgttcgagttccgattg |
43799258 |
T |
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| Q |
318 |
gtccgtggatttgccccaagtgttctgatgtgaaggtcaagaaactcaaaagtaagagattgaaattgt |
386 |
Q |
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| T |
43799259 |
gtccgtggatttgccccaagtgttctgatgtgaaggtcaagaaactcaaaagtaagagattgaaattgt |
43799327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 471 - 561
Target Start/End: Original strand, 43799406 - 43799496
Alignment:
| Q |
471 |
aatgtgttacagagctttctcagaagaaaattcttgatttcttcgggcttcgtagggattctcttttcgggaacaatcgtgcttcatctca |
561 |
Q |
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| T |
43799406 |
aatgtgttacagagctttctcagaagaaaattcttgatttcttcgggcttcgtagggattctcttttcgggaacaatcgtgcttcttctca |
43799496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 183 - 341
Target Start/End: Original strand, 43794299 - 43794457
Alignment:
| Q |
183 |
aggaggattacggtgacctcctgtgtgagcaatgtgggtccggtgaacaaccggaggagctgcttttgtgtgacaaatgtgacaatggttttcatatgaa |
282 |
Q |
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| T |
43794299 |
aggaggattacagtgactgcatgtgtgagcgatgtggatctggtgaacaacctgaggagcttttgttgtgtgacaaatgcgacaaaggttttcatatgaa |
43794398 |
T |
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| Q |
283 |
atgtgtcagaccaattgttgttcgagttccgattggtccgtggatttgccccaagtgtt |
341 |
Q |
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| T |
43794399 |
gtgtctgagaccgattctggctagagttcctattggttcatggatttgccccaagtgtt |
43794457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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