View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2819_low_3 (Length: 398)
Name: NF2819_low_3
Description: NF2819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2819_low_3 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 8092072 - 8091672
Alignment:
| Q |
1 |
ataaaacaagtacgacgagtgcatgtttggactgacaatgaattctactggatcactacattttaaagtttcattagaattacggtgctattgtaatttt |
100 |
Q |
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| T |
8092072 |
ataaaacaagtacgacgagtgcatgtttggactgacaatgaattctactggatcactacattttaaagtttcattagaattacggtgctattgtaatttt |
8091973 |
T |
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| Q |
101 |
gccaaacgcaccatcaatttaaagatgcactaaactaaccaacctaccttgcgtttgcccattcgccaacccatccaaaaccttggtgtgctctgcaaca |
200 |
Q |
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| T |
8091972 |
gccaaacgcaccatcaatttaaagatgcactaaactaaccaacctaccttgcgtttgcccattcgccaacccatccaaaaccttggtgtgctctgcaaca |
8091873 |
T |
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| Q |
201 |
tatatagataagaaaagtcaaata---aacttatgagtataatcatagaagagaaaggagggcagttcctcttacaaaataaaatgagcgtgtcattttg |
297 |
Q |
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| T |
8091872 |
tatatagataagaaaagtcaaataagcaacttatgagtataatcttagaagagaaaggagggcagttcctcttacaaaataaaatgagcgtgtcattttg |
8091773 |
T |
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| Q |
298 |
tcggtgatcaagtgtgagtttagaagtcttatatcggatgaaaaagttaatacattgagtaacatataacttagatgatatatattttgcaaatagacac |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8091772 |
tcggtgatcaagtgtgagtttagaagtcttatatcggatgaaaaagttaatatattgagtaacatataacttagatgatatatattttgcaaatagacac |
8091673 |
T |
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| Q |
398 |
c |
398 |
Q |
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| T |
8091672 |
c |
8091672 |
T |
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