View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2819_low_4 (Length: 376)
Name: NF2819_low_4
Description: NF2819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2819_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 1e-94; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 18 - 229
Target Start/End: Original strand, 17781338 - 17781549
Alignment:
| Q |
18 |
attccaaggcactctcccacctaaattaaatttaaataaattacatttctacgctgtcaaaactgcannnnnnnnaaaaatataaataaatttatagtga |
117 |
Q |
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| T |
17781338 |
attccaaggcactctcccacctaaattaaatttaaataaattacatttctacgctgtcaaaactgcatttttttttaaaaaataaataaatttatagtga |
17781437 |
T |
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| Q |
118 |
acaaatcatttcattcatatctagaaagagtacaatataggcttgttcagcttgcatagaagcattacccaacccagttttgattccaaatctatataac |
217 |
Q |
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| T |
17781438 |
acaaatcatttcattcatatgtagaaagagtacaatataggcttgttcagcttgcatagaagcattacccaacccagttttgattccaaatctatataac |
17781537 |
T |
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| Q |
218 |
ctaaacctacaa |
229 |
Q |
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|||||||||||| |
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| T |
17781538 |
ctaaacctacaa |
17781549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 231 - 366
Target Start/End: Original strand, 17781611 - 17781746
Alignment:
| Q |
231 |
acgggtcgatcattttgtcaactcttgaatcagagacataaggttagtataagacgatccgttctccatcaaagcaactctacacttttctctcatatct |
330 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17781611 |
acgggtcgatcattttgtcaactcttgaatcagagacataaggttagtataagacgatccgttctccatcaaagcaactctacacttttctctcatatct |
17781710 |
T |
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| Q |
331 |
tttaccttcctcctaatctcatcactaccgttcatc |
366 |
Q |
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| T |
17781711 |
tttaccttcctcctaatctcatcactaaggttcatc |
17781746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 228 - 366
Target Start/End: Original strand, 20581953 - 20582091
Alignment:
| Q |
228 |
aatacgggtcgatcattttgtcaactcttgaatcagagacataaggttagtataagacgatccgttctccatcaaagcaactctacacttttctctcata |
327 |
Q |
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|||| |||| |||||||||||||| ||||||||||||||||||||||| |||||||| ||||| |||||||||||| ||| |||||||||| ||||| |
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| T |
20581953 |
aatatgggttgatcattttgtcaattcttgaatcagagacataaggttggtataagatgatccattctccatcaaactaaccttacacttttcactcatt |
20582052 |
T |
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| Q |
328 |
tcttttaccttcctcctaatctcatcactaccgttcatc |
366 |
Q |
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| T |
20582053 |
tcttttaccttcctcctaatctcatcactattgttcatc |
20582091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 240 - 366
Target Start/End: Original strand, 20562802 - 20562928
Alignment:
| Q |
240 |
tcattttgtcaactcttgaatcagagacataaggttagtataagacgatccgttctccatcaaagcaactctacacttttctctcatatcttttaccttc |
339 |
Q |
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| T |
20562802 |
tcattttgttaactcttgaatgagagatacaagattagtataagatgatccattatccatcaaagcaaatctacacttttcactcatttctttaaccttc |
20562901 |
T |
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| Q |
340 |
ctcctaatctcatcactaccgttcatc |
366 |
Q |
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| T |
20562902 |
ctcctaatctcatgactattgttcatc |
20562928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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