View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2819_low_9 (Length: 283)
Name: NF2819_low_9
Description: NF2819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2819_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 211
Target Start/End: Original strand, 3895326 - 3895519
Alignment:
| Q |
18 |
aggaaggagcgagttacatggctgataagacaaaagaaggagctgagaaaacggcagagaagacgggggaggttgctgggtcggcgacagaggctttgaa |
117 |
Q |
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| T |
3895326 |
aggaaggagcgagttacatggctgataagacaaaagaaggagctgagaaaacggcggagaagacgggggaggttgctgggtcggcgacagaggctttgaa |
3895425 |
T |
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| Q |
118 |
gagtgctggggaaatggcgaagaagacggcccaaggagcgtgggagacagcgaaggatgcaacacaaaagatcaaggagactgttgttggaaag |
211 |
Q |
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| T |
3895426 |
gagtgctggggaaatggcgaagaagacggcccaaggagcgtgggagacagcgaaggatgcaacacaaaagatcaaggagactgttgttggaaag |
3895519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 233 - 269
Target Start/End: Original strand, 3895538 - 3895574
Alignment:
| Q |
233 |
cgtggtagtggtggttctggtgtagtagtagatgatg |
269 |
Q |
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| T |
3895538 |
cgtggtagtggtggttctggtgtagtagtagatgatg |
3895574 |
T |
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