View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2821_low_1 (Length: 644)
Name: NF2821_low_1
Description: NF2821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2821_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 1 - 526
Target Start/End: Complemental strand, 4031676 - 4031117
Alignment:
| Q |
1 |
tccactgattgataattgaagtgcaaaggtgatgtgagtgaaagacgcacacttatgagaaatatcgttgaagttcaaatgtcggttatttgactatgaa |
100 |
Q |
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| T |
4031676 |
tccattgattgataattgaagtgcaaaggtgatgtgagttaaagacgcacacttatgagaaatatggttgaagttcaaatgtcggttatttgactatgaa |
4031577 |
T |
|
| Q |
101 |
tgacttaaatgaataacatataaaagagatgacctattt-tccaaagttccttgaacttccccaacaaatatgttactataatcttatatatctatgatt |
199 |
Q |
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| T |
4031576 |
tgagttaaatgaataacatataaaagagatgacctatttgtccaaagttccttgaacttccccaacaaatatgttactataatcttatatatctatgatt |
4031477 |
T |
|
| Q |
200 |
aacatatttatagaactatgaagacaattacaaagaaacaaaaaacaagcatatcccttc---------------atttgttaattaattgaagagaagg |
284 |
Q |
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| T |
4031476 |
aacatatttatagaactatgaagacaattac-aagaaacaaaaaacaagcatatcccttcatttgatatccctttatttgttaattaattgaagagaagg |
4031378 |
T |
|
| Q |
285 |
ttaaaatcaaccatctacaattaaagtcaattaggagagattataattattgtcatatcatatggtcatctcttcactagttaggtgaattacaaagatg |
384 |
Q |
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| T |
4031377 |
ttaaaatcaaccatctacaattaaagtcaattaggagagattataattattgtcatatcatatggtcatctcttcactagttaggtgaattacaaagatg |
4031278 |
T |
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| Q |
385 |
tgatacacataaatctctat-------------atatcattagcttcttccaattctcaatgatgaatcaacatcaac------atctttatctttatct |
465 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
4031277 |
tgatacacataaatctctatacacattcaccacatatcattagcttcttccaattctcaatgatgaatcaacatcaacatctttatctttatctttatct |
4031178 |
T |
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| Q |
466 |
ttattattaacatttgcaaagatcctagcaatttcaagttgtgtattagcaataatttcag |
526 |
Q |
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| T |
4031177 |
ttattattaacatttgcaaagatcctagcaatttcaagttgtgtattagcaataatttcag |
4031117 |
T |
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