View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2821_low_5 (Length: 274)
Name: NF2821_low_5
Description: NF2821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2821_low_5 |
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| [»] scaffold1301 (1 HSPs) |
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Alignment Details
Target: scaffold1301 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: scaffold1301
Description:
Target: scaffold1301; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 613 - 356
Alignment:
| Q |
1 |
acaaacaaacaaaacaagtaatcaagagttttgtgtcagaaacagccctctcaacttgtgtaaaagtgttcttaaacaagattgtttctagcgtgttcgt |
100 |
Q |
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||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| | |||| | |
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| T |
613 |
acaaacaaacaaagcaagtaatggagagttttgtgtcagaaacagccctctcaacttgtgtgaaagtgttgttaaacaagattgtttctagtgagttcat |
514 |
T |
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| Q |
101 |
gaacaactacaggaggatgaagcttcacaattcacatttggaaaagctccagacagagctgctcagttttgaagttgtacctaatgatgatgctgttagc |
200 |
Q |
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| T |
513 |
ggacacctacaggaagacgaatcttgacattccactcttggaaaagctccagacagaactgctcaattttgaagttgtacctaatgatgatgctgttagc |
414 |
T |
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| Q |
201 |
gtacatgtatggttgaataggctcaaaaatgctgtctcgaatgttaactatttgtttg |
258 |
Q |
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| T |
413 |
gtacatgtatggttgaacaggctcaaaaatgctgtctcgaatgttaactatttgtttg |
356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 17310953 - 17311171
Alignment:
| Q |
1 |
acaaacaaacaaaacaagtaatcaagagttttgtgtcagaaacagccctctcaacttgtgtaaaagtgttcttaaacaagattgtttctagcgtgttcgt |
100 |
Q |
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||||||||||||| |||||||| | || |||||| ||||||| |||||||||||| || ||||| | |||||||||||||||||||| | |||||| |
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| T |
17310953 |
acaaacaaacaaagcaagtaatggaaggtattgtgttagaaacactcctctcaacttgcgtcaaagtcatgttaaacaagattgtttctagtgagttcgt |
17311052 |
T |
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| Q |
101 |
gaacaactacaggaggatgaagcttcacaattcacatttggaaaagctccagacagagctgctcagttttgaagttgtacctaatgatgatgctgttagc |
200 |
Q |
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| T |
17311053 |
ggacaactacaggaggacgaagcttgatgtttcgctcttggaaaatctcaagacagaactgctcagttttgaagttgtagttaacgatgatgctgttagt |
17311152 |
T |
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| Q |
201 |
gtacatgtatggttgaata |
219 |
Q |
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|| ||||||||||||||| |
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| T |
17311153 |
gtcaatgtatggttgaata |
17311171 |
T |
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