View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2822_high_10 (Length: 212)
Name: NF2822_high_10
Description: NF2822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2822_high_10 |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 26120071 - 26119860
Alignment:
| Q |
1 |
ccaggaggatatttgtttacaatgctggtttcttctatatcagaccaaccattccttcaattgagcttttggaccgtgtggcagcacgactttcgaagga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
26120071 |
ccaggaggatatttgtttacaatgctggtttcttctatatcagaccaaccattccttcaattgagcttttggaccgtgtggcagcacgacttttgaagga |
26119972 |
T |
|
| Q |
101 |
gaaagcatgggaccaagttgttttcaacgaggaactcttttatccatcacatcctggttatgacgggcttcatgcttctaaaagaactatggatatatat |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
26119971 |
gaaagcatgggaccaagtcgttttcaacgaggaactctttcatccatcatatcctggttatgacgggcttcatgctgctaaaagaactatggatatatat |
26119872 |
T |
|
| Q |
201 |
ctttttatgaat |
212 |
Q |
| |
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|||||||||||| |
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| T |
26119871 |
ctttttatgaat |
26119860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 26096784 - 26096574
Alignment:
| Q |
1 |
ccaggaggatatttgtttacaatgctggtttcttctatatcagaccaaccattccttcaattgagcttttggaccgtgtggcagcacgactttcgaagga |
100 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26096784 |
ccaggaggatatttgtttacaattgtggtttcttctatatcagaccaaccattccttcaattgagcttttggaccgtgtggcagcacgactttcgaagga |
26096685 |
T |
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| Q |
101 |
gaaagcatgggaccaagttgttttcaacgaggaactcttttatccatcacatcctggttatgacgggcttcatgcttctaaaagaactatggatatatat |
200 |
Q |
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| T |
26096684 |
gaaagcatgggaccaagtcgttttcaacgaggaactcttttatccgtcgcatcctggttatgacgggcttcatgcttctaaaagaactatggatatatat |
26096585 |
T |
|
| Q |
201 |
ctttttatgaa |
211 |
Q |
| |
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||||||||||| |
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| T |
26096584 |
ctttttatgaa |
26096574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 5 - 211
Target Start/End: Complemental strand, 26084505 - 26084299
Alignment:
| Q |
5 |
gaggatatttgtttacaatgctggtttcttctatatcagaccaaccattccttcaattgagcttttggaccgtgtggcagcacgactttcgaaggagaaa |
104 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
26084505 |
gaggatatttgtttacaattctggtttcttctatatcagaccaaccattccttcaattgagcttttggaccgtgtggcagcacgactttcgaagggtaat |
26084406 |
T |
|
| Q |
105 |
gcatgggaccaagttgttttcaacgaggaactcttttatccatcacatcctggttatgacgggcttcatgcttctaaaagaactatggatatatatcttt |
204 |
Q |
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||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
26084405 |
gcatgggaccaagccgttttcaacgaggaactctttcatccatcacatcctggttatgacgggcttcatgctgctaaaagaactatggatatatatcttt |
26084306 |
T |
|
| Q |
205 |
ttatgaa |
211 |
Q |
| |
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||||||| |
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| T |
26084305 |
ttatgaa |
26084299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 6 - 212
Target Start/End: Complemental strand, 26126723 - 26126517
Alignment:
| Q |
6 |
aggatatttgtttacaatgctggtttcttctatatcagaccaaccattccttcaattgagcttttggaccgtgtggcagcacgactttcgaaggagaaag |
105 |
Q |
| |
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||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||| | |
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| T |
26126723 |
aggatatgggtttacaattctggtttcttctatatcagaccaaccattccttcaattgagcttttggaccgtgtggctgcacgactttcaaaagagaatg |
26126624 |
T |
|
| Q |
106 |
catgggaccaagttgttttcaacgaggaactcttttatccatcacatcctggttatgacgggcttcatgcttctaaaagaactatggatatatatctttt |
205 |
Q |
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|||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
26126623 |
catgggaccaaggcgttttcaacgaggaactcttttatccgtcgcatcctggttatgacgggcttcatgctgctaaaagaactatggatatatatctttt |
26126524 |
T |
|
| Q |
206 |
tatgaat |
212 |
Q |
| |
|
||||||| |
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| T |
26126523 |
tatgaat |
26126517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 6 - 212
Target Start/End: Complemental strand, 26064779 - 26064573
Alignment:
| Q |
6 |
aggatatttgtttacaatgctggtttcttctatatcagaccaaccattccttcaattgagcttttggaccgtgtggcagcacgactttcgaaggagaaag |
105 |
Q |
| |
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||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||| | ||||| |||||||||| |
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| T |
26064779 |
aggatatgggtttacaattctggtttcttctatattagaccaaccattccttcaattgagcttttggatcgtgtggcggcaaggctttccaaggagaaag |
26064680 |
T |
|
| Q |
106 |
catgggaccaagttgttttcaacgaggaactcttttatccatcacatcctggttatgacgggcttcatgcttctaaaagaactatggatatatatctttt |
205 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||| || ||||| |
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| T |
26064679 |
catgggaccaagccgtttttaacgaggaactcttttatccatcgcatcctggttatgacgggcttcatgctgctaaaaggactatggatatgtacctttt |
26064580 |
T |
|
| Q |
206 |
tatgaat |
212 |
Q |
| |
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||||||| |
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| T |
26064579 |
tatgaat |
26064573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 5 - 211
Target Start/End: Complemental strand, 26036132 - 26035926
Alignment:
| Q |
5 |
gaggatatttgtttacaatgctggtttcttctatatcagaccaaccattccttcaattgagcttttggaccgtgtggcagcacgactttcgaaggagaaa |
104 |
Q |
| |
|
|||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||| |||||| |
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| T |
26036132 |
gaggatatgggtttacaattccggtttcttctatatcagaccaaccattccttcaattgagcttttggaccgtgtcgcgacacggctttccaaggaggtt |
26036033 |
T |
|
| Q |
105 |
gcatgggaccaagttgttttcaacgaggaactcttttatccatcacatcctggttatgacgggcttcatgcttctaaaagaactatggatatatatcttt |
204 |
Q |
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||||||||||||| ||||||||||||||||| |||||||| ||||| ||||||||||| |||||||||||| ||| ||||||||||||||| ||||| | |
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| T |
26036032 |
gcatgggaccaagccgttttcaacgaggaactattttatccgtcacaccctggttatgaagggcttcatgctgctagaagaactatggatatgtatctct |
26035933 |
T |
|
| Q |
205 |
ttatgaa |
211 |
Q |
| |
|
||||||| |
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|
| T |
26035932 |
ttatgaa |
26035926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 42 - 211
Target Start/End: Complemental strand, 6773416 - 6773247
Alignment:
| Q |
42 |
agaccaaccattccttcaattgagcttttggaccgtgtggcagcacgactttcgaaggagaaagcatgggaccaagttgttttcaacgaggaactctttt |
141 |
Q |
| |
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|||||||| |||||||||||||||||||||| || || || | || ||||| || |||||||||||||| |||| ||||| || || ||||| |||| |
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| T |
6773416 |
agaccaacacttccttcaattgagcttttggatcgcgttgcggaccggctttctaaagagaaagcatgggatcaagcagtttttaatgaagaactttttt |
6773317 |
T |
|
| Q |
142 |
atccatcacatcctggttatgacgggcttcatgcttctaaaagaactatggatatatatctttttatgaa |
211 |
Q |
| |
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| || ||||||||||||||||| || ||||||||| | || ||||| |||||||| || ||||||||||| |
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| T |
6773316 |
acccttcacatcctggttatgatggacttcatgctgcaaagagaacaatggatatgtacctttttatgaa |
6773247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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