View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2822_high_2 (Length: 432)
Name: NF2822_high_2
Description: NF2822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2822_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 10 - 413
Target Start/End: Complemental strand, 3853018 - 3852615
Alignment:
| Q |
10 |
aaatgaacaaaaccaacaaacagtagaacaaagagactcaaatgaaaagagtctaatgtataggttgagagaaaatcccnnnnnnngtttcaaactttca |
109 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
3853018 |
aaatgaacaaaaccaacaaacagtagaacagagagactcaaatgaaaagagtctaatgtataggttgagagaaaatcccaaaaaaagtttcaaactttca |
3852919 |
T |
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| Q |
110 |
gatcccaagttttatttctcaactacagaaactattgttcatgacagagagagtgaaaccgagtcaaagaacccaactcaaaaaagaaaactcacctttg |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3852918 |
gatcccaagttttatttctcaactacagaaactattgttcatgacagagagagtgaaaccgagtcaaagaacccaactcaaaaaagaaaactcacctttg |
3852819 |
T |
|
| Q |
210 |
gccaaaactcagtacaaaagaagcttaaacagactttaacaaattcacattcaccactaacagaagctgaaccagaacctgttacttcacttttcaactt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3852818 |
gccaaaactcagtacaaaagaagcttaaacagactttaacaaattcacattcaccactaacagaagctgaaccagaacctgttacttcacttttcaactt |
3852719 |
T |
|
| Q |
310 |
ttcccctgaagaagaagctgctataaccctcatgttgctatcaagagataaatggaagatcaatgttgctgtcaaagaagaagaacaagaagtttgtggg |
409 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3852718 |
ttcccctgaagaagaagctgctataaccctcatgatgctatcaagagataaatggaagatcaatgttgctgtcaaagaagaagaacaagaagtttgtggg |
3852619 |
T |
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| Q |
410 |
aagt |
413 |
Q |
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|||| |
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| T |
3852618 |
aagt |
3852615 |
T |
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