View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2822_high_8 (Length: 237)

Name: NF2822_high_8
Description: NF2822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2822_high_8
NF2822_high_8
[»] chr2 (12 HSPs)
chr2 (16-192)||(202450-202644)
chr2 (9-70)||(25624339-25624400)
chr2 (9-65)||(11830497-11830553)
chr2 (9-53)||(25623421-25623465)
chr2 (9-64)||(8710706-8710761)
chr2 (14-65)||(15604576-15604627)
chr2 (14-71)||(41588289-41588346)
chr2 (14-70)||(6588821-6588877)
chr2 (9-53)||(20983184-20983228)
chr2 (9-53)||(21103214-21103258)
chr2 (9-53)||(29957950-29957994)
chr2 (9-53)||(29958470-29958514)
[»] chr4 (27 HSPs)
chr4 (14-156)||(30641655-30641811)
chr4 (14-65)||(22986989-22987040)
chr4 (14-65)||(27891722-27891773)
chr4 (14-65)||(22718176-22718227)
chr4 (14-65)||(50504062-50504113)
chr4 (9-53)||(23455612-23455656)
chr4 (9-65)||(27069043-27069099)
chr4 (9-53)||(40316914-40316958)
chr4 (9-53)||(40326988-40327032)
chr4 (9-64)||(9731450-9731505)
chr4 (14-53)||(11524087-11524126)
chr4 (19-65)||(11524186-11524232)
chr4 (17-54)||(38813695-38813732)
chr4 (17-53)||(5818024-5818060)
chr4 (9-65)||(10408126-10408182)
chr4 (9-53)||(23455087-23455131)
chr4 (9-69)||(32063571-32063631)
chr4 (9-53)||(38982519-38982563)
chr4 (9-65)||(45463310-45463366)
chr4 (9-53)||(50503958-50504002)
chr4 (9-65)||(51859540-51859596)
chr4 (9-65)||(52573361-52573417)
chr4 (9-53)||(52815796-52815840)
chr4 (9-53)||(52816346-52816390)
chr4 (9-53)||(54858693-54858737)
chr4 (9-53)||(55867365-55867409)
chr4 (9-53)||(56556715-56556759)
[»] chr1 (22 HSPs)
chr1 (9-113)||(32132437-32132538)
chr1 (109-150)||(32132551-32132592)
chr1 (9-53)||(13295268-13295312)
chr1 (14-54)||(30326634-30326674)
chr1 (9-65)||(31058294-31058350)
chr1 (9-65)||(35038588-35038644)
chr1 (9-65)||(40714577-40714633)
chr1 (9-65)||(45750079-45750135)
chr1 (9-65)||(49955480-49955536)
chr1 (9-53)||(50062336-50062380)
chr1 (14-53)||(5734147-5734186)
chr1 (14-65)||(8898655-8898706)
chr1 (14-53)||(20760754-20760793)
chr1 (14-61)||(28325045-28325092)
chr1 (14-73)||(35040843-35040902)
chr1 (14-52)||(5734963-5735001)
chr1 (9-53)||(7371423-7371467)
chr1 (9-65)||(28324937-28324993)
chr1 (9-53)||(46282204-46282248)
chr1 (9-53)||(46282716-46282760)
chr1 (9-53)||(49093174-49093218)
chr1 (9-53)||(49093736-49093780)
[»] chr7 (20 HSPs)
chr7 (14-70)||(13384640-13384696)
chr7 (9-65)||(25453365-25453421)
chr7 (14-65)||(42618148-42618199)
chr7 (15-65)||(32934585-32934635)
chr7 (9-70)||(4226258-4226319)
chr7 (9-70)||(47945481-47945542)
chr7 (9-70)||(47950911-47950972)
chr7 (9-53)||(23058678-23058722)
chr7 (9-65)||(25628611-25628667)
chr7 (9-53)||(43124403-43124447)
chr7 (9-53)||(45914657-45914701)
chr7 (14-65)||(10600186-10600237)
chr7 (14-53)||(27138190-27138229)
chr7 (14-61)||(43266507-43266554)
chr7 (9-53)||(18087589-18087633)
chr7 (9-53)||(22661490-22661534)
chr7 (9-53)||(27480120-27480164)
chr7 (9-53)||(27480670-27480714)
chr7 (9-65)||(32068333-32068389)
chr7 (14-70)||(47558168-47558224)
[»] scaffold0388 (2 HSPs)
scaffold0388 (9-53)||(12488-12532)
scaffold0388 (14-61)||(12377-12424)
[»] chr8 (11 HSPs)
chr8 (9-65)||(6471823-6471879)
chr8 (9-65)||(25124800-25124856)
chr8 (9-65)||(15230168-15230224)
chr8 (9-65)||(44664641-44664697)
chr8 (14-61)||(25124701-25124748)
chr8 (9-70)||(2535784-2535845)
chr8 (16-65)||(21432930-21432979)
chr8 (9-53)||(34177221-34177265)
chr8 (9-53)||(34213897-34213941)
chr8 (9-53)||(34214451-34214495)
chr8 (9-53)||(34665903-34665947)
[»] chr6 (13 HSPs)
chr6 (9-65)||(22503011-22503067)
chr6 (14-61)||(21836271-21836318)
chr6 (14-65)||(31407115-31407166)
chr6 (9-53)||(1661353-1661397)
chr6 (9-65)||(7905480-7905536)
chr6 (9-65)||(21836163-21836219)
chr6 (14-53)||(8089581-8089620)
chr6 (14-65)||(12065358-12065409)
chr6 (14-65)||(15913785-15913836)
chr6 (9-53)||(4117470-4117514)
chr6 (9-65)||(7160937-7160993)
chr6 (9-53)||(14657132-14657176)
chr6 (9-53)||(33400099-33400143)
[»] chr3 (27 HSPs)
chr3 (9-69)||(6956382-6956442)
chr3 (9-65)||(32306557-32306613)
chr3 (9-63)||(52032271-52032325)
chr3 (14-63)||(3596348-3596397)
chr3 (9-65)||(3469333-3469389)
chr3 (9-65)||(29118775-29118831)
chr3 (9-65)||(40788657-40788713)
chr3 (9-53)||(45279207-45279251)
chr3 (14-53)||(29192916-29192955)
chr3 (14-53)||(41422110-41422149)
chr3 (14-53)||(52032388-52032427)
chr3 (16-65)||(11910839-11910888)
chr3 (14-63)||(43998384-43998433)
chr3 (9-53)||(1756683-1756727)
chr3 (9-53)||(2944046-2944090)
chr3 (9-53)||(2944589-2944633)
chr3 (9-53)||(9368552-9368596)
chr3 (9-53)||(11026555-11026599)
chr3 (9-65)||(29686074-29686130)
chr3 (9-53)||(32716382-32716426)
chr3 (9-53)||(32717028-32717072)
chr3 (9-53)||(35643984-35644028)
chr3 (9-53)||(37249721-37249765)
chr3 (9-53)||(37778522-37778566)
chr3 (9-53)||(45278677-45278721)
chr3 (9-53)||(48188511-48188555)
chr3 (9-53)||(48189022-48189066)
[»] chr5 (12 HSPs)
chr5 (14-65)||(20153155-20153206)
chr5 (9-53)||(22870385-22870429)
chr5 (14-65)||(17544285-17544336)
chr5 (14-53)||(22298680-22298719)
chr5 (14-70)||(11741751-11741807)
chr5 (9-53)||(20072254-20072298)
chr5 (9-53)||(20072792-20072836)
chr5 (14-50)||(33871590-33871626)
chr5 (9-53)||(36476898-36476942)
chr5 (9-53)||(36477299-36477343)
chr5 (9-53)||(39181190-39181234)
chr5 (9-53)||(39181719-39181763)
[»] scaffold0328 (1 HSPs)
scaffold0328 (9-65)||(11377-11433)
[»] scaffold0006 (1 HSPs)
scaffold0006 (14-53)||(222038-222077)
[»] scaffold0128 (1 HSPs)
scaffold0128 (14-68)||(19995-20049)
[»] scaffold0042 (1 HSPs)
scaffold0042 (9-65)||(12017-12073)


Alignment Details
Target: chr2 (Bit Score: 67; Significance: 7e-30; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 16 - 192
Target Start/End: Complemental strand, 202644 - 202450
Alignment:
Q  16 atcaaattaacaaaatgacatgggaatagacaaaaatattctcgtcatccttctttttatatcttcatcctcaccacaatccaacaatcttcat------ 109  Q
    ||||||||| ||||||| |||| |||||||||||||||   || ||||||||||| |||||||||||||  |||||||||||||||||||||||          
T  202644 atcaaattagcaaaatggcatgagaatagacaaaaataccttcatcatccttcttcttatatcttcatctccaccacaatccaacaatcttcatcatcaa 202545  T
Q  110 -----------catctctcccattgaacattataatcaacagcaaacacaaatccaga-nnnnnnnnccactaatcacgcaaaacatttaatctt 192  Q
               |||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||    
T  202544 catcaatccttcatctctcccattgaacattataatcaacagcaaacacaaatccagatttttttttccactaatcacgcaaaacatttaatctt 202450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 25624400 - 25624339
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaatattctcgtcatccttctt 70  Q
    |||| ||||||||||||||||||| ||||||||| ||||||||||  ||| |||||||||||    
T  25624400 ccacatcatcaaattaacaaaatggcatgggaatggacaaaaataccctcatcatccttctt 25624339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 11830497 - 11830553
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaatattctcgtcatcc 65  Q
    |||| ||||||||||| ||||||| ||||||||| ||||||||||  ||||||||||    
T  11830497 ccacgtcatcaaattagcaaaatggcatgggaatggacaaaaataccctcgtcatcc 11830553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 25623421 - 25623465
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaata 53  Q
    |||| ||||||||||||||||||| ||||||||| ||||||||||    
T  25623421 ccacgtcatcaaattaacaaaatggcatgggaatggacaaaaata 25623465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 8710761 - 8710706
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaatattctcgtcatc 64  Q
    |||| ||||||||||| ||||||| ||||||||| ||||||||||  |||||||||    
T  8710761 ccacgtcatcaaattagcaaaatggcatgggaatggacaaaaataccctcgtcatc 8710706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 15604627 - 15604576
Alignment:
Q  14 tcatcaaattaacaaaatgacatgggaatagacaaaaatattctcgtcatcc 65  Q
    ||||||||||| ||||||| ||||||||| ||||||||||  ||||||||||    
T  15604627 tcatcaaattagcaaaatggcatgggaatggacaaaaataccctcgtcatcc 15604576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 41588346 - 41588289
Alignment:
Q  14 tcatcaaattaacaaaatgacatgggaatagacaaaaatattctcgtcatccttcttt 71  Q
    ||||||||||| ||||||| ||||| ||| ||||||||||  |||||| |||||||||    
T  41588346 tcatcaaattagcaaaatggcatggaaattgacaaaaataccctcgtcttccttcttt 41588289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 6588821 - 6588877
Alignment:
Q  14 tcatcaaattaacaaaatgacatgggaatagacaaaaatattctcgtcatccttctt 70  Q
    ||||||||||| ||||||| ||||||||| ||||||||||  |||  ||||||||||    
T  6588821 tcatcaaattagcaaaatggcatgggaatggacaaaaataccctcaccatccttctt 6588877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 20983228 - 20983184
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaata 53  Q
    |||| ||||||||||| ||||||| ||||||||| ||||||||||    
T  20983228 ccacgtcatcaaattagcaaaatggcatgggaattgacaaaaata 20983184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 21103214 - 21103258
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaata 53  Q
    |||| ||||||||||| ||||||| ||||||||| ||||||||||    
T  21103214 ccacgtcatcaaattagcaaaatggcatgggaattgacaaaaata 21103258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 29957950 - 29957994
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaata 53  Q
    |||| ||||||||||| ||||||| ||||||||| ||||||||||    
T  29957950 ccacgtcatcaaattagcaaaatggcatgggaattgacaaaaata 29957994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 29958514 - 29958470
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaata 53  Q
    |||| ||||||||||| ||||||| ||||||||| ||||||||||    
T  29958514 ccacgtcatcaaattagcaaaatggcatgggaattgacaaaaata 29958470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 156
Target Start/End: Original strand, 30641655 - 30641811
Alignment:
Q  14 tcatcaaattaacaaaatgacatgggaatagacaaaaatattctcgtcatccttctttttatatcttcatcctcaccacaatccaacaatcttcatcat- 112  Q
    ||||||||||| ||||||| ||||||||| ||||||| ||  ||| |||||||||||   | ||||||||| | |||||||||||||||||||||||||     
T  30641655 tcatcaaattagcaaaatgtcatgggaatggacaaaattaccctcatcatccttctt---agatcttcatctttaccacaatccaacaatcttcatcatc 30641751  T
Q  113 ----------------ctctcccattgaacattataatcaacagcaaacacaaatccaga 156  Q
                    ||||||||||||||||||||||||||| ||||||||||||||||    
T  30641752 aacatcaatccttcatctctcccattgaacattataatcaacaacaaacacaaatccaga 30641811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 22986989 - 22987040
Alignment:
Q  14 tcatcaaattaacaaaatgacatgggaatagacaaaaatattctcgtcatcc 65  Q
    ||||||||||| ||||||||||||||||||||||||||||  ||||||||||    
T  22986989 tcatcaaattagcaaaatgacatgggaatagacaaaaataccctcgtcatcc 22987040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 27891722 - 27891773
Alignment:
Q  14 tcatcaaattaacaaaatgacatgggaatagacaaaaatattctcgtcatcc 65  Q
    ||||||||||| ||||||||||||||||| ||||||||||| ||||||||||    
T  27891722 tcatcaaattagcaaaatgacatgggaatggacaaaaatatcctcgtcatcc 27891773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 22718227 - 22718176
Alignment:
Q  14 tcatcaaattaacaaaatgacatgggaatagacaaaaatattctcgtcatcc 65  Q
    ||||||||||| ||||||||||||||||| ||||||||||  ||||||||||    
T  22718227 tcatcaaattagcaaaatgacatgggaatggacaaaaataccctcgtcatcc 22718176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 50504113 - 50504062
Alignment:
Q  14 tcatcaaattaacaaaatgacatgggaatagacaaaaatattctcgtcatcc 65  Q
    ||||||||||| ||||||||||||||||| ||||||||||  ||||||||||    
T  50504113 tcatcaaattagcaaaatgacatgggaatggacaaaaataccctcgtcatcc 50504062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 23455656 - 23455612
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaata 53  Q
    |||| ||||||||||| ||||||||||||||||| ||||||||||    
T  23455656 ccacgtcatcaaattagcaaaatgacatgggaatggacaaaaata 23455612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 27069043 - 27069099
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaatattctcgtcatcc 65  Q
    |||| ||||||||||| ||||||| ||||||||| ||||||||||  ||||||||||    
T  27069043 ccacgtcatcaaattagcaaaatggcatgggaatggacaaaaataccctcgtcatcc 27069099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 40316958 - 40316914
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaata 53  Q
    |||| ||||||||||| ||||||||||||||||| ||||||||||    
T  40316958 ccacatcatcaaattagcaaaatgacatgggaatggacaaaaata 40316914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 40327032 - 40326988
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaata 53  Q
    |||| ||||||||||| ||||||||||||||||| ||||||||||    
T  40327032 ccacatcatcaaattagcaaaatgacatgggaatggacaaaaata 40326988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 9731505 - 9731450
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaatattctcgtcatc 64  Q
    |||| ||||||||||| ||||||| |||||||||  |||||||||| |||||||||    
T  9731505 ccacgtcatcaaattagcaaaatggcatgggaatgaacaaaaatatcctcgtcatc 9731450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 11524087 - 11524126
Alignment:
Q  14 tcatcaaattaacaaaatgacatgggaatagacaaaaata 53  Q
    ||||||||||| ||||||| ||||||||||||||||||||    
T  11524087 tcatcaaattagcaaaatggcatgggaatagacaaaaata 11524126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 11524232 - 11524186
Alignment:
Q  19 aaattaacaaaatgacatgggaatagacaaaaatattctcgtcatcc 65  Q
    |||||| ||||||| ||||||||| ||||||||||| ||||||||||    
T  11524232 aaattagcaaaatggcatgggaatggacaaaaatatcctcgtcatcc 11524186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 38813695 - 38813732
Alignment:
Q  17 tcaaattaacaaaatgacatgggaatagacaaaaatat 54  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  38813695 tcaaattagcaaaatgacatgggaattgacaaaaatat 38813732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 5818060 - 5818024
Alignment:
Q  17 tcaaattaacaaaatgacatgggaatagacaaaaata 53  Q
    |||||||| ||||||| ||||||||||||||||||||    
T  5818060 tcaaattagcaaaatggcatgggaatagacaaaaata 5818024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 10408182 - 10408126
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaatattctcgtcatcc 65  Q
    |||| ||||||||||| |||||||| ||| |||| ||||||||||  ||||||||||    
T  10408182 ccacatcatcaaattagcaaaatgatatgagaatggacaaaaataccctcgtcatcc 10408126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 23455087 - 23455131
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaata 53  Q
    |||| ||||||||||| ||||||| ||||||||| ||||||||||    
T  23455087 ccacgtcatcaaattagcaaaatggcatgggaatggacaaaaata 23455131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 32063631 - 32063571
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaatattctcgtcatccttct 69  Q
    |||| ||||||||||| ||||||| |||| |||| ||||||||||  ||| ||||||||||    
T  32063631 ccacgtcatcaaattagcaaaatggcatgagaatggacaaaaataccctcatcatccttct 32063571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 38982563 - 38982519
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaata 53  Q
    |||| ||||||||||| ||||||| ||||||||| ||||||||||    
T  38982563 ccacgtcatcaaattagcaaaatggcatgggaattgacaaaaata 38982519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 45463366 - 45463310
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaatattctcgtcatcc 65  Q
    |||| ||||||||||| ||||||| ||||||||| |||||||| |  ||||||||||    
T  45463366 ccacgtcatcaaattagcaaaatggcatgggaatggacaaaaacaccctcgtcatcc 45463310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 50503958 - 50504002
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaata 53  Q
    |||| ||||||||||| ||||||| ||||||||| ||||||||||    
T  50503958 ccacgtcatcaaattagcaaaatggcatgggaatggacaaaaata 50504002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 51859540 - 51859596
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaatattctcgtcatcc 65  Q
    |||| ||||||||||| ||||||| |||| |||| ||||||||||  ||||||||||    
T  51859540 ccacatcatcaaattagcaaaatggcatgagaatggacaaaaataccctcgtcatcc 51859596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 52573361 - 52573417
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaatattctcgtcatcc 65  Q
    |||| ||||||||||| ||||||| |||| |||| ||||||||||  ||||||||||    
T  52573361 ccacgtcatcaaattagcaaaatggcatgagaatggacaaaaataccctcgtcatcc 52573417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 52815796 - 52815840
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaata 53  Q
    |||| ||||||||||| ||||||| ||||||||| ||||||||||    
T  52815796 ccacgtcatcaaattagcaaaatggcatgggaattgacaaaaata 52815840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 52816390 - 52816346
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaata 53  Q
    |||| ||||||||||| ||||||| ||||||||| ||||||||||    
T  52816390 ccacgtcatcaaattagcaaaatggcatgggaattgacaaaaata 52816346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 54858693 - 54858737
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaata 53  Q
    |||| ||||||||||| ||||||| |||||||| |||||||||||    
T  54858693 ccacgtcatcaaattagcaaaatggcatgggaacagacaaaaata 54858737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 55867409 - 55867365
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaata 53  Q
    |||| ||||||||||| ||||||||||| ||||| ||||||||||    
T  55867409 ccacgtcatcaaattagcaaaatgacattggaattgacaaaaata 55867365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 56556715 - 56556759
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaata 53  Q
    |||| ||||||||||| ||||||| ||||||||| ||||||||||    
T  56556715 ccacgtcatcaaattagcaaaatggcatgggaattgacaaaaata 56556759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 32132437 - 32132538
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaatattctcgtcatccttctttttatatcttcatcctcaccacaatccaacaatcttca 108  Q
    |||| ||||||||||| ||||||| ||||||||| ||||||||||  ||| |||||||||||   | |||||  || | |||||||||||||||||||||    
T  32132437 ccacgtcatcaaattagcaaaatgtcatgggaatggacaaaaataacctcatcatccttctt---agatcttattctttaccacaatccaacaatcttca 32132533  T
Q  109 tcatc 113  Q
    |||||    
T  32132534 tcatc 32132538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 109 - 150
Target Start/End: Original strand, 32132551 - 32132592
Alignment:
Q  109 tcatctctcccattgaacattataatcaacagcaaacacaaa 150  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  32132551 tcatctctcccattgaacattataatcaacaacaaacacaaa 32132592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 13295268 - 13295312
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaata 53  Q
    |||| ||||||||||| ||||||||||||| ||||||||||||||    
T  13295268 ccacgtcatcaaattagcaaaatgacatggaaatagacaaaaata 13295312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 30326634 - 30326674
Alignment:
Q  14 tcatcaaattaacaaaatgacatgggaatagacaaaaatat 54  Q
    ||||||||||| ||||||||||||||||| |||||||||||    
T  30326634 tcatcaaattagcaaaatgacatgggaatggacaaaaatat 30326674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 31058350 - 31058294
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaatattctcgtcatcc 65  Q
    |||| ||||||||||| ||||||| ||||||||| ||||||||||  ||||||||||    
T  31058350 ccacgtcatcaaattagcaaaatggcatgggaatggacaaaaataccctcgtcatcc 31058294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 35038588 - 35038644
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaatattctcgtcatcc 65  Q
    |||| ||||||||||| ||||||| ||||||||| ||||||||||| ||| ||||||    
T  35038588 ccacgtcatcaaattagcaaaatggcatgggaatggacaaaaatatcctcatcatcc 35038644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 40714577 - 40714633
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaatattctcgtcatcc 65  Q
    |||| ||||||||||| ||||||| ||||||||| ||||||||||  ||||||||||    
T  40714577 ccacgtcatcaaattagcaaaatggcatgggaatggacaaaaataccctcgtcatcc 40714633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 45750135 - 45750079
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaatattctcgtcatcc 65  Q
    |||| ||||||||||| ||||||| ||||||||| |||||||||||  |||||||||    
T  45750135 ccacgtcatcaaattagcaaaatggcatgggaatggacaaaaatatcatcgtcatcc 45750079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 49955480 - 49955536
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaatattctcgtcatcc 65  Q
    |||| ||||||||||| ||||||| ||||||||| ||||||||||  ||||||||||    
T  49955480 ccacatcatcaaattagcaaaatggcatgggaatggacaaaaataccctcgtcatcc 49955536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 50062336 - 50062380
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaata 53  Q
    |||| ||||||||||| ||||||||||||||||| ||||||||||    
T  50062336 ccacgtcatcaaattagcaaaatgacatgggaattgacaaaaata 50062380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 5734147 - 5734186
Alignment:
Q  14 tcatcaaattaacaaaatgacatgggaatagacaaaaata 53  Q
    ||||||||||||||||||| ||||||||| ||||||||||    
T  5734147 tcatcaaattaacaaaatggcatgggaatggacaaaaata 5734186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 8898655 - 8898706
Alignment:
Q  14 tcatcaaattaacaaaatgacatgggaatagacaaaaatattctcgtcatcc 65  Q
    ||||||||||| ||||||| ||||||||| ||||||||||  ||||||||||    
T  8898655 tcatcaaattagcaaaatggcatgggaatggacaaaaataccctcgtcatcc 8898706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 20760793 - 20760754
Alignment:
Q  14 tcatcaaattaacaaaatgacatgggaatagacaaaaata 53  Q
    ||||||||||| ||||||||||||||||| ||||||||||    
T  20760793 tcatcaaattagcaaaatgacatgggaatggacaaaaata 20760754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 61
Target Start/End: Complemental strand, 28325092 - 28325045
Alignment:
Q  14 tcatcaaattaacaaaatgacatgggaatagacaaaaatattctcgtc 61  Q
    ||||||||||| ||||||||||| ||||| ||||||||||| ||||||    
T  28325092 tcatcaaattagcaaaatgacataggaatggacaaaaatatcctcgtc 28325045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 73
Target Start/End: Complemental strand, 35040902 - 35040843
Alignment:
Q  14 tcatcaaattaacaaaatgacatgggaatagacaaaaatattctcgtcatccttcttttt 73  Q
    ||||||||||| ||||||| ||||||||| ||||||||||  |||||| | |||||||||    
T  35040902 tcatcaaattagcaaaatggcatgggaatggacaaaaataccctcgtctttcttcttttt 35040843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 5735001 - 5734963
Alignment:
Q  14 tcatcaaattaacaaaatgacatgggaatagacaaaaat 52  Q
    ||||||||||||||||||| |||| ||||||||||||||    
T  5735001 tcatcaaattaacaaaatggcatgagaatagacaaaaat 5734963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 7371423 - 7371467
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaata 53  Q
    |||| ||||||||||| ||||||| ||||||||| ||||||||||    
T  7371423 ccacgtcatcaaattagcaaaatggcatgggaatggacaaaaata 7371467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 28324937 - 28324993
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaatattctcgtcatcc 65  Q
    |||| ||||||||||| ||||||| ||||| ||| ||||||||||  ||||||||||    
T  28324937 ccacgtcatcaaattagcaaaatggcatggaaatggacaaaaataccctcgtcatcc 28324993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 46282204 - 46282248
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaata 53  Q
    |||| ||||||||||| ||||||| ||||||||| ||||||||||    
T  46282204 ccacgtcatcaaattagcaaaatggcatgggaattgacaaaaata 46282248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 46282760 - 46282716
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaata 53  Q
    |||| ||||||||||| ||||||| ||||||||| ||||||||||    
T  46282760 ccacatcatcaaattagcaaaatggcatgggaattgacaaaaata 46282716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 49093174 - 49093218
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaata 53  Q
    |||| ||||||||||| ||||||| ||||||||| ||||||||||    
T  49093174 ccacgtcatcaaattagcaaaatggcatgggaattgacaaaaata 49093218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 49093780 - 49093736
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaata 53  Q
    |||| ||||||||||| ||||||| ||||||||| ||||||||||    
T  49093780 ccacgtcatcaaattagcaaaatggcatgggaattgacaaaaata 49093736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 13384640 - 13384696
Alignment:
Q  14 tcatcaaattaacaaaatgacatgggaatagacaaaaatattctcgtcatccttctt 70  Q
    ||||||||||||||||||||||||||||| ||||||||||  ||| |||||||||||    
T  13384640 tcatcaaattaacaaaatgacatgggaatggacaaaaataccctcatcatccttctt 13384696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 25453421 - 25453365
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaatattctcgtcatcc 65  Q
    |||| ||||||||||| ||||||| ||||||||| ||||||||||| ||||||||||    
T  25453421 ccacgtcatcaaattagcaaaatggcatgggaatggacaaaaatatcctcgtcatcc 25453365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 42618199 - 42618148
Alignment:
Q  14 tcatcaaattaacaaaatgacatgggaatagacaaaaatattctcgtcatcc 65  Q
    ||||||||||| ||||||| ||||||||| ||||||||||| ||||||||||    
T  42618199 tcatcaaattagcaaaatggcatgggaatggacaaaaatatcctcgtcatcc 42618148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 32934635 - 32934585
Alignment:
Q  15 catcaaattaacaaaatgacatgggaatagacaaaaatattctcgtcatcc 65  Q
    |||||||||| ||||||||||||||||| ||||||||||  ||||||||||    
T  32934635 catcaaattagcaaaatgacatgggaatggacaaaaataccctcgtcatcc 32934585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 4226258 - 4226319
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaatattctcgtcatccttctt 70  Q
    |||| ||||||||||| ||||||| ||||||||| ||||||||||  ||| |||||||||||    
T  4226258 ccacgtcatcaaattagcaaaatggcatgggaatggacaaaaataccctcatcatccttctt 4226319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 47945481 - 47945542
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaatattctcgtcatccttctt 70  Q
    |||| ||||||||||||||||||| ||| ||||| ||||||||||  ||| |||||||||||    
T  47945481 ccacatcatcaaattaacaaaatggcataggaatggacaaaaataccctcatcatccttctt 47945542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 47950911 - 47950972
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaatattctcgtcatccttctt 70  Q
    |||| ||||||||||||||||||| ||| ||||| ||||||||||  ||| |||||||||||    
T  47950911 ccacatcatcaaattaacaaaatggcataggaatggacaaaaataccctcatcatccttctt 47950972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 23058722 - 23058678
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaata 53  Q
    |||| ||||||||||||||||||| ||||||||| ||||||||||    
T  23058722 ccacgtcatcaaattaacaaaatggcatgggaatggacaaaaata 23058678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 25628611 - 25628667
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaatattctcgtcatcc 65  Q
    |||| ||||||||||| ||||||| ||||||||| ||||||||||  ||||||||||    
T  25628611 ccacgtcatcaaattagcaaaatggcatgggaatggacaaaaataccctcgtcatcc 25628667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 43124447 - 43124403
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaata 53  Q
    |||| ||||||||||| ||||||||||||||||| ||||||||||    
T  43124447 ccacgtcatcaaattagcaaaatgacatgggaatggacaaaaata 43124403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 45914657 - 45914701
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaata 53  Q
    |||| ||||||||||| ||||||||||||||||| ||||||||||    
T  45914657 ccacgtcatcaaattagcaaaatgacatgggaatggacaaaaata 45914701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 10600237 - 10600186
Alignment:
Q  14 tcatcaaattaacaaaatgacatgggaatagacaaaaatattctcgtcatcc 65  Q
    ||||||||||| ||||||| ||||||||| ||||||||||  ||||||||||    
T  10600237 tcatcaaattagcaaaatggcatgggaatggacaaaaataccctcgtcatcc 10600186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 27138229 - 27138190
Alignment:
Q  14 tcatcaaattaacaaaatgacatgggaatagacaaaaata 53  Q
    |||||||||||||||||| |||||||||| ||||||||||    
T  27138229 tcatcaaattaacaaaataacatgggaatggacaaaaata 27138190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 61
Target Start/End: Complemental strand, 43266554 - 43266507
Alignment:
Q  14 tcatcaaattaacaaaatgacatgggaatagacaaaaatattctcgtc 61  Q
    ||||||||||| |||||||||||| |||| |||||||||| |||||||    
T  43266554 tcatcaaattagcaaaatgacatgagaatggacaaaaatactctcgtc 43266507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 18087633 - 18087589
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaata 53  Q
    |||| ||||||||||| ||||||| ||||||||| ||||||||||    
T  18087633 ccacgtcatcaaattagcaaaatggcatgggaatggacaaaaata 18087589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 22661490 - 22661534
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaata 53  Q
    |||| ||||||||||| ||||||| ||||||||| ||||||||||    
T  22661490 ccacgtcatcaaattagcaaaatggcatgggaattgacaaaaata 22661534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 27480120 - 27480164
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaata 53  Q
    |||| ||||||||||| ||||||| ||||||||| ||||||||||    
T  27480120 ccacgtcatcaaattagcaaaatggcatgggaattgacaaaaata 27480164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 27480714 - 27480670
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaata 53  Q
    |||| ||||||||||| ||||||| ||||||||| ||||||||||    
T  27480714 ccacgtcatcaaattagcaaaatggcatgggaattgacaaaaata 27480670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 32068389 - 32068333
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaatattctcgtcatcc 65  Q
    |||| ||||||||||| ||||||| ||||||||| |||||||| |  ||||||||||    
T  32068389 ccacgtcatcaaattagcaaaatggcatgggaattgacaaaaagaccctcgtcatcc 32068333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 47558168 - 47558224
Alignment:
Q  14 tcatcaaattaacaaaatgacatgggaatagacaaaaatattctcgtcatccttctt 70  Q
    ||||||||||| ||||||| ||||||||| || |||||||  ||| |||||||||||    
T  47558168 tcatcaaattagcaaaatgtcatgggaatggataaaaataccctcatcatccttctt 47558224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0388 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: scaffold0388
Description:

Target: scaffold0388; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 12532 - 12488
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaata 53  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||    
T  12532 ccacgtcatcaaattagcaaaatgacatgggaatagacaaaaata 12488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0388; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 61
Target Start/End: Original strand, 12377 - 12424
Alignment:
Q  14 tcatcaaattaacaaaatgacatgggaatagacaaaaatattctcgtc 61  Q
    ||||||||||| ||||||||||||| ||| ||||||||||| ||||||    
T  12377 tcatcaaattagcaaaatgacatggaaatggacaaaaatatcctcgtc 12424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 6471823 - 6471879
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaatattctcgtcatcc 65  Q
    |||| ||||||||||| ||||||||||||||||| || |||||||| ||||||||||    
T  6471823 ccacgtcatcaaattagcaaaatgacatgggaatggataaaaatatcctcgtcatcc 6471879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 25124856 - 25124800
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaatattctcgtcatcc 65  Q
    |||| ||||||||||| ||||||||||||||||| ||||||||||  ||||||||||    
T  25124856 ccacgtcatcaaattagcaaaatgacatgggaatggacaaaaataccctcgtcatcc 25124800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 15230224 - 15230168
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaatattctcgtcatcc 65  Q
    |||| ||||||||||| ||||||| ||||||||| ||||||||||  ||||||||||    
T  15230224 ccacgtcatcaaattagcaaaatggcatgggaatggacaaaaataccctcgtcatcc 15230168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 44664641 - 44664697
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaatattctcgtcatcc 65  Q
    |||| ||||||||||| ||||||| || |||||| ||||||||||| ||||||||||    
T  44664641 ccacgtcatcaaattagcaaaatggcacgggaatggacaaaaatatcctcgtcatcc 44664697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 61
Target Start/End: Original strand, 25124701 - 25124748
Alignment:
Q  14 tcatcaaattaacaaaatgacatgggaatagacaaaaatattctcgtc 61  Q
    ||||||||||| |||||||| |||||||| |||||||||| |||||||    
T  25124701 tcatcaaattagcaaaatgatatgggaattgacaaaaatactctcgtc 25124748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 2535845 - 2535784
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaatattctcgtcatccttctt 70  Q
    |||| |||||||||||  |||||| ||||||||| ||||||||||  ||| |||||||||||    
T  2535845 ccacatcatcaaattagtaaaatggcatgggaatggacaaaaatacactcatcatccttctt 2535784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 21432979 - 21432930
Alignment:
Q  16 atcaaattaacaaaatgacatgggaatagacaaaaatattctcgtcatcc 65  Q
    ||||||||| ||||||||||||||||| || |||||||  ||||||||||    
T  21432979 atcaaattagcaaaatgacatgggaatggataaaaataccctcgtcatcc 21432930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 34177265 - 34177221
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaata 53  Q
    |||| ||||||||||| ||||||| ||||||||| ||||||||||    
T  34177265 ccacatcatcaaattagcaaaatggcatgggaatggacaaaaata 34177221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 34213897 - 34213941
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaata 53  Q
    |||| ||||||||||| ||||||| ||||||||| ||||||||||    
T  34213897 ccacgtcatcaaattagcaaaatggcatgggaattgacaaaaata 34213941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 34214495 - 34214451
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaata 53  Q
    |||| ||||||||||| ||||||| ||||||||| ||||||||||    
T  34214495 ccacatcatcaaattagcaaaatggcatgggaattgacaaaaata 34214451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 34665903 - 34665947
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaata 53  Q
    |||| ||||||||||| ||||||| ||||||||| ||||||||||    
T  34665903 ccacgtcatcaaattagcaaaatggcatgggaattgacaaaaata 34665947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 22503067 - 22503011
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaatattctcgtcatcc 65  Q
    |||| ||||||||||| ||||||||||||||||| ||||||||||  ||||||||||    
T  22503067 ccacgtcatcaaattagcaaaatgacatgggaatggacaaaaataccctcgtcatcc 22503011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 61
Target Start/End: Complemental strand, 21836318 - 21836271
Alignment:
Q  14 tcatcaaattaacaaaatgacatgggaatagacaaaaatattctcgtc 61  Q
    ||||||||||||||||||| ||||||||| ||||||||||| ||||||    
T  21836318 tcatcaaattaacaaaatggcatgggaatggacaaaaatatcctcgtc 21836271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 31407166 - 31407115
Alignment:
Q  14 tcatcaaattaacaaaatgacatgggaatagacaaaaatattctcgtcatcc 65  Q
    ||||||||||| ||||||||||||||||| ||||||||||  ||||||||||    
T  31407166 tcatcaaattagcaaaatgacatgggaatggacaaaaataccctcgtcatcc 31407115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 1661397 - 1661353
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaata 53  Q
    |||||||||||||||| ||||||| ||||||||| ||||||||||    
T  1661397 ccacttcatcaaattatcaaaatggcatgggaattgacaaaaata 1661353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 7905536 - 7905480
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaatattctcgtcatcc 65  Q
    |||| ||||||||||| ||||||| ||||||||| ||||||||||  ||||||||||    
T  7905536 ccacgtcatcaaattagcaaaatggcatgggaatggacaaaaataccctcgtcatcc 7905480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 21836163 - 21836219
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaatattctcgtcatcc 65  Q
    |||| ||||||||||| ||||||| ||||||||| ||||||||||  ||||||||||    
T  21836163 ccacgtcatcaaattagcaaaatggcatgggaatggacaaaaataccctcgtcatcc 21836219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 8089581 - 8089620
Alignment:
Q  14 tcatcaaattaacaaaatgacatgggaatagacaaaaata 53  Q
    ||||||||||||||||||| ||||||||| ||||||||||    
T  8089581 tcatcaaattaacaaaatggcatgggaatggacaaaaata 8089620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 12065358 - 12065409
Alignment:
Q  14 tcatcaaattaacaaaatgacatgggaatagacaaaaatattctcgtcatcc 65  Q
    ||||||||||| ||||||| ||||||||| ||||||||||  ||||||||||    
T  12065358 tcatcaaattagcaaaatggcatgggaatggacaaaaataccctcgtcatcc 12065409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 15913836 - 15913785
Alignment:
Q  14 tcatcaaattaacaaaatgacatgggaatagacaaaaatattctcgtcatcc 65  Q
    ||||||||||| ||||||| ||||||||| ||||||||||  ||||||||||    
T  15913836 tcatcaaattagcaaaatggcatgggaatggacaaaaataccctcgtcatcc 15913785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 4117514 - 4117470
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaata 53  Q
    |||| ||||||||||| ||||||| ||||||||| ||||||||||    
T  4117514 ccacatcatcaaattagcaaaatggcatgggaattgacaaaaata 4117470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 7160937 - 7160993
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaatattctcgtcatcc 65  Q
    |||| ||||||||||| ||||||  ||||||||| ||||||||||  ||||||||||    
T  7160937 ccacgtcatcaaattagcaaaatagcatgggaatggacaaaaataccctcgtcatcc 7160993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 14657176 - 14657132
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaata 53  Q
    |||| ||||||||||| ||||||| ||||||||| ||||||||||    
T  14657176 ccacgtcatcaaattagcaaaatggcatgggaattgacaaaaata 14657132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 33400099 - 33400143
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaata 53  Q
    |||| ||||||||||| ||||||| ||||||||| ||||||||||    
T  33400099 ccacgtcatcaaattagcaaaatggcatgggaattgacaaaaata 33400143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 6956382 - 6956442
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaatattctcgtcatccttct 69  Q
    |||| |||| |||||||||||||||||||||||| ||||||||||  ||| ||||||||||    
T  6956382 ccacgtcataaaattaacaaaatgacatgggaatggacaaaaataccctcatcatccttct 6956442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 32306557 - 32306613
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaatattctcgtcatcc 65  Q
    |||| ||||||||||| ||||||||| ||||||| ||||||||||| ||||||||||    
T  32306557 ccacgtcatcaaattagcaaaatgacttgggaatggacaaaaatatcctcgtcatcc 32306613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 63
Target Start/End: Original strand, 52032271 - 52032325
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaatattctcgtcat 63  Q
    |||| ||||||||||||||||||| ||||||||| ||||||||||  ||||||||    
T  52032271 ccacgtcatcaaattaacaaaatggcatgggaatggacaaaaataccctcgtcat 52032325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 3596397 - 3596348
Alignment:
Q  14 tcatcaaattaacaaaatgacatgggaatagacaaaaatattctcgtcat 63  Q
    ||||||||||| ||||||||||||||||| ||||||||||  ||||||||    
T  3596397 tcatcaaattagcaaaatgacatgggaatggacaaaaataccctcgtcat 3596348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 3469333 - 3469389
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaatattctcgtcatcc 65  Q
    |||| ||||||||||| ||||||| ||||||||| ||||||||||  ||||||||||    
T  3469333 ccacgtcatcaaattagcaaaatggcatgggaatggacaaaaataccctcgtcatcc 3469389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 29118831 - 29118775
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaatattctcgtcatcc 65  Q
    |||| |||||| |||| ||||||| ||||||||||||||||||||  ||||||||||    
T  29118831 ccacgtcatcacattagcaaaatggcatgggaatagacaaaaataccctcgtcatcc 29118775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 40788713 - 40788657
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaatattctcgtcatcc 65  Q
    |||| ||||||||||| ||||||| ||||||||| ||||||||||  ||||||||||    
T  40788713 ccacgtcatcaaattagcaaaatggcatgggaatggacaaaaataccctcgtcatcc 40788657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 45279251 - 45279207
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaata 53  Q
    |||| ||||||||||| ||||||||||||||||| ||||||||||    
T  45279251 ccacgtcatcaaattagcaaaatgacatgggaatggacaaaaata 45279207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 29192955 - 29192916
Alignment:
Q  14 tcatcaaattaacaaaatgacatgggaatagacaaaaata 53  Q
    ||||||||||| ||||||||||||||||| ||||||||||    
T  29192955 tcatcaaattagcaaaatgacatgggaattgacaaaaata 29192916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 41422110 - 41422149
Alignment:
Q  14 tcatcaaattaacaaaatgacatgggaatagacaaaaata 53  Q
    ||||||||||| ||||||||||||||||| ||||||||||    
T  41422110 tcatcaaattagcaaaatgacatgggaatggacaaaaata 41422149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 52032427 - 52032388
Alignment:
Q  14 tcatcaaattaacaaaatgacatgggaatagacaaaaata 53  Q
    ||||||||||| ||||||||||||||||| ||||||||||    
T  52032427 tcatcaaattagcaaaatgacatgggaatggacaaaaata 52032388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 11910839 - 11910888
Alignment:
Q  16 atcaaattaacaaaatgacatgggaatagacaaaaatattctcgtcatcc 65  Q
    ||||||||| ||||||| ||||||||| |||||||||||  |||||||||    
T  11910839 atcaaattagcaaaatggcatgggaatggacaaaaatatcatcgtcatcc 11910888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 43998433 - 43998384
Alignment:
Q  14 tcatcaaattaacaaaatgacatgggaatagacaaaaatattctcgtcat 63  Q
    ||||||||||| ||||||| |||| |||| ||||||||||| ||||||||    
T  43998433 tcatcaaattagcaaaatgccatgagaatggacaaaaatatcctcgtcat 43998384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 1756683 - 1756727
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaata 53  Q
    |||| ||||||||||| ||||||| ||||||||| ||||||||||    
T  1756683 ccacgtcatcaaattagcaaaatggcatgggaattgacaaaaata 1756727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 2944046 - 2944090
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaata 53  Q
    |||| ||||||||||| ||||||| ||||||||| ||||||||||    
T  2944046 ccacgtcatcaaattagcaaaatggcatgggaattgacaaaaata 2944090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 2944633 - 2944589
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaata 53  Q
    |||| ||||||||||| ||||||| ||||||||| ||||||||||    
T  2944633 ccacgtcatcaaattagcaaaatggcatgggaattgacaaaaata 2944589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 9368596 - 9368552
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaata 53  Q
    |||| ||||||||||||||||||| |||| |||| ||||||||||    
T  9368596 ccacgtcatcaaattaacaaaatggcatgagaatggacaaaaata 9368552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 11026599 - 11026555
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaata 53  Q
    |||| ||||||||||| ||||||| ||||||||| ||||||||||    
T  11026599 ccacgtcatcaaattagcaaaatggcatgggaattgacaaaaata 11026555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 29686074 - 29686130
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaatattctcgtcatcc 65  Q
    |||| ||||||||||| ||||||| ||||||||| || |||||||  ||||||||||    
T  29686074 ccacgtcatcaaattagcaaaatggcatgggaatggagaaaaataccctcgtcatcc 29686130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 32716382 - 32716426
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaata 53  Q
    |||| ||||||||||| ||||||| ||||||||| ||||||||||    
T  32716382 ccacgtcatcaaattagcaaaatggcatgggaatggacaaaaata 32716426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 32717072 - 32717028
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaata 53  Q
    |||| ||||||||||| ||||||||||| ||||| ||||||||||    
T  32717072 ccacgtcatcaaattagcaaaatgacataggaatggacaaaaata 32717028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 35643984 - 35644028
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaata 53  Q
    |||| ||||||||||| ||||||| ||||||||| ||||||||||    
T  35643984 ccacgtcatcaaattagcaaaatggcatgggaatggacaaaaata 35644028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 37249765 - 37249721
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaata 53  Q
    |||| ||||||||||| ||||||| ||||||||| ||||||||||    
T  37249765 ccacgtcatcaaattagcaaaatggcatgggaattgacaaaaata 37249721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 37778566 - 37778522
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaata 53  Q
    |||| ||||||||||| ||||||| |||| |||||||||||||||    
T  37778566 ccacgtcatcaaattagcaaaatggcatgagaatagacaaaaata 37778522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 45278677 - 45278721
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaata 53  Q
    |||| ||||||||||| ||||||| ||||||||| ||||||||||    
T  45278677 ccacgtcatcaaattagcaaaatggcatgggaattgacaaaaata 45278721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 48188511 - 48188555
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaata 53  Q
    |||| ||||||||||| ||||||| ||||||||| ||||||||||    
T  48188511 ccacgtcatcaaattagcaaaatgccatgggaattgacaaaaata 48188555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 48189066 - 48189022
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaata 53  Q
    |||| ||||||||||| ||||||| ||||||||| ||||||||||    
T  48189066 ccacgtcatcaaattagcaaaatggcatgggaattgacaaaaata 48189022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 20153206 - 20153155
Alignment:
Q  14 tcatcaaattaacaaaatgacatgggaatagacaaaaatattctcgtcatcc 65  Q
    ||||||||||| ||||||||||||||||| ||||||||||  ||||||||||    
T  20153206 tcatcaaattagcaaaatgacatgggaatggacaaaaataccctcgtcatcc 20153155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 22870429 - 22870385
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaata 53  Q
    |||| ||||||||||| ||||||||||||||||| ||||||||||    
T  22870429 ccacgtcatcaaattagcaaaatgacatgggaatggacaaaaata 22870385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 17544336 - 17544285
Alignment:
Q  14 tcatcaaattaacaaaatgacatgggaatagacaaaaatattctcgtcatcc 65  Q
    ||||||||||| ||||||| ||||||||| ||||||||||  ||||||||||    
T  17544336 tcatcaaattagcaaaatggcatgggaatggacaaaaataccctcgtcatcc 17544285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 22298680 - 22298719
Alignment:
Q  14 tcatcaaattaacaaaatgacatgggaatagacaaaaata 53  Q
    ||||||||||| ||||||||||||||||| ||||||||||    
T  22298680 tcatcaaattagcaaaatgacatgggaattgacaaaaata 22298719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 11741807 - 11741751
Alignment:
Q  14 tcatcaaattaacaaaatgacatgggaatagacaaaaatattctcgtcatccttctt 70  Q
    ||||||||||| ||||||| ||| ||||| ||||||||||  ||| |||||||||||    
T  11741807 tcatcaaattagcaaaatggcattggaatggacaaaaataccctcatcatccttctt 11741751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 20072254 - 20072298
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaata 53  Q
    |||| ||||||||||| ||||||| ||||||||| ||||||||||    
T  20072254 ccacgtcatcaaattagcaaaatggcatgggaattgacaaaaata 20072298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 20072836 - 20072792
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaata 53  Q
    |||| ||||||||||| ||||||| ||||||||| ||||||||||    
T  20072836 ccacgtcatcaaattagcaaaatggcatgggaattgacaaaaata 20072792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 50
Target Start/End: Complemental strand, 33871626 - 33871590
Alignment:
Q  14 tcatcaaattaacaaaatgacatgggaatagacaaaa 50  Q
    ||||||||||| ||||||||||||||||| |||||||    
T  33871626 tcatcaaattagcaaaatgacatgggaatggacaaaa 33871590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 36476898 - 36476942
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaata 53  Q
    |||| ||||||||||| ||||||| ||||||||| ||||||||||    
T  36476898 ccacatcatcaaattagcaaaatggcatgggaattgacaaaaata 36476942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 36477343 - 36477299
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaata 53  Q
    |||| ||||||||||| ||||||| ||||||||| ||||||||||    
T  36477343 ccacgtcatcaaattagcaaaatggcatgggaattgacaaaaata 36477299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 39181190 - 39181234
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaata 53  Q
    |||| ||||||||||| ||||||| ||||||||| ||||||||||    
T  39181190 ccacgtcatcaaattagcaaaatggcatgggaattgacaaaaata 39181234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 39181763 - 39181719
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaata 53  Q
    |||| ||||||||||| ||||||| ||||||||| ||||||||||    
T  39181763 ccacgtcatcaaattagcaaaatggcatgggaattgacaaaaata 39181719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 11433 - 11377
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaatattctcgtcatcc 65  Q
    |||| ||||||||||| ||||||| ||||||||| ||||||||||  ||||||||||    
T  11433 ccacgtcatcaaattagcaaaatggcatgggaatggacaaaaataccctcgtcatcc 11377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 222077 - 222038
Alignment:
Q  14 tcatcaaattaacaaaatgacatgggaatagacaaaaata 53  Q
    ||||||||||||||||||| ||||||||| ||||||||||    
T  222077 tcatcaaattaacaaaatggcatgggaatggacaaaaata 222038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 19995 - 20049
Alignment:
Q  14 tcatcaaattaacaaaatgacatgggaatagacaaaaatattctcgtcatccttc 68  Q
    ||||||||||| ||||||| ||||||||| |||||||||| |||| || ||||||    
T  19995 tcatcaaattagcaaaatggcatgggaatggacaaaaatactctcttcttccttc 20049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 12073 - 12017
Alignment:
Q  9 ccacttcatcaaattaacaaaatgacatgggaatagacaaaaatattctcgtcatcc 65  Q
    |||| ||||||||||| ||||||| |||| |||| |||||||||||  |||||||||    
T  12073 ccacgtcatcaaattagcaaaatggcatgagaatggacaaaaatatcatcgtcatcc 12017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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