View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2822_low_1 (Length: 543)
Name: NF2822_low_1
Description: NF2822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2822_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 1 - 527
Target Start/End: Original strand, 38627169 - 38627696
Alignment:
| Q |
1 |
tcaccgtagattcagttgtgatcatgccgtcgagcattcatgcgtagaaccggctatggagatcgtacatgtagactcttaatggagcttcagcggcgca |
100 |
Q |
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| T |
38627169 |
tcaccggagcttccgttgtgttccggccgtcgagcattccgacgttgaaccggcgagggagatcgtacatgtagactcttaatggagcttcatcggcgca |
38627268 |
T |
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| Q |
101 |
cggagtagttgcaataatcgacggtgattgttgataataagatcgaatgtccagtgttccgattaaaattgagcatggaatgaagatcagaagcgctaag |
200 |
Q |
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| T |
38627269 |
cggagtagttgcaataatcgacggtgattgttgataataagatcgaatgtccagtgttccgattaaaattgagcatggaatgaagatcagaagcgctaag |
38627368 |
T |
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| Q |
201 |
gtgaaagaaataaccactttacctaacannnnnnnnn-aatttaatgatgtatataattttcttctaatgaaaatttgtaagaagatgtagtgaagttgt |
299 |
Q |
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| T |
38627369 |
gtgaaaaaaataaccactttacctaacattttttttttaatttaatgatgtatataattttcttctaatgaaaatttgtaagaagatgcagtgaagttgt |
38627468 |
T |
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| Q |
300 |
taatggcgcagttggttcatttactttgtatttgtggtcagtggcaatgtggcattcattgcccataaatgtgtggaaatgcatgtgctgaagatgcatt |
399 |
Q |
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| T |
38627469 |
taatggcgcagttggttcatttactttgtatttgtggtcagtggcaatgtggcattcattgcccataaatgtgtggaaatgcatgtgctgaagatgcatt |
38627568 |
T |
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| Q |
400 |
gcttggtttggaggttgagtatattggtgtttgtttgcatcaaagtaatttgattagcatgtgttagccactattttcgagtcttgttcattgcgcatga |
499 |
Q |
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| T |
38627569 |
gcttggtttggaggttgagtatattggtgtttgtttgcatcaaagtaatttgattagcatgtgttagccactattttcgagtcttgttcattgcgcatga |
38627668 |
T |
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| Q |
500 |
aacggagatgcggtggataacttcttca |
527 |
Q |
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| T |
38627669 |
aacggaaatgcggtggataacttcttca |
38627696 |
T |
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