View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2822_low_11 (Length: 242)
Name: NF2822_low_11
Description: NF2822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2822_low_11 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 90; Significance: 1e-43; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 153 - 242
Target Start/End: Complemental strand, 203723 - 203634
Alignment:
| Q |
153 |
atattgtggtgctaaaaagaaaatgacaatagatttaccaatacaccaaaatctgatgatccaaatcaattcaacatgtttaattttaat |
242 |
Q |
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| T |
203723 |
atattgtggtgctaaaaagaaaatgacaatagatttaccaatacaccaaaatctgatgatccaaatcaattcaacatgtttaattttaat |
203634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 213717 - 213593
Alignment:
| Q |
1 |
aatagtgaaatgaaattaggttttctaatatacgatacgagactcactcactctaaacccttaaccgggtcgggcac---------ttcggcccatcctt |
91 |
Q |
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| T |
213717 |
aatagtgaaatgaaattaggttttctaatatacgatacgagactcactcactctaaacccttaaccgggtcgggcactctcattcatttggcccatcctt |
213618 |
T |
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| Q |
92 |
cataagcccacccacaattcacatt |
116 |
Q |
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| T |
213617 |
cataagcccacccacaattcacatt |
213593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 108 - 151
Target Start/End: Complemental strand, 208943 - 208900
Alignment:
| Q |
108 |
attcacatttcactttttcttccttcatttttattttaaacaaa |
151 |
Q |
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| T |
208943 |
attcacatttcaccttttcttccttcatttttattttaaacaaa |
208900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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