View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2822_low_3 (Length: 402)

Name: NF2822_low_3
Description: NF2822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2822_low_3
NF2822_low_3
[»] chr3 (3 HSPs)
chr3 (20-402)||(4869719-4870101)
chr3 (20-402)||(4844024-4844406)
chr3 (242-295)||(40144330-40144383)
[»] scaffold0176 (1 HSPs)
scaffold0176 (237-282)||(27531-27576)
[»] chr1 (1 HSPs)
chr1 (237-282)||(32997052-32997097)
[»] chr6 (1 HSPs)
chr6 (241-282)||(18228658-18228699)
[»] chr2 (2 HSPs)
chr2 (237-282)||(6583307-6583352)
chr2 (270-350)||(38361103-38361182)
[»] scaffold0085 (1 HSPs)
scaffold0085 (270-350)||(15796-15875)
[»] chr7 (4 HSPs)
chr7 (237-275)||(28360506-28360544)
chr7 (237-282)||(24720133-24720178)
chr7 (256-285)||(42317638-42317667)
chr7 (237-285)||(42317005-42317053)
[»] chr8 (1 HSPs)
chr8 (238-291)||(15942107-15942160)
[»] chr4 (1 HSPs)
chr4 (270-350)||(16902916-16902995)


Alignment Details
Target: chr3 (Bit Score: 363; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 20 - 402
Target Start/End: Original strand, 4869719 - 4870101
Alignment:
Q  20 ggtagagggatggataggtgtggaaggagtaggggttgaaattgtccttcgagtggtagtatttttggggatgatttggccctgatggtgaatcaaggag 119  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  4869719 ggtagagggatggataggtgtggaaggagttggggttgaaattgtccttcgagtggtagtatttttggggatgattcggccctgatggtgaatgaaggag 4869818  T
Q  120 aagaggaacgatggcgctgtattaggtttacgagagaaggatgagtaccaacaacttactgataccatgtaagaattataataagataattattagtcgt 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4869819 aagaggaacgatggcgctgtattaggtttacgagagaaggatgagtaccaacaacttactgataccatgtaagaattataataagataattattagtcgt 4869918  T
Q  220 gtgtcatttgcattgagaggatccgttgacactaggtgtcaaactttagtttgacatcaaatctcaaccgtctattatgtctaatctaatggtctgtgat 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4869919 gtgtcatttgcattgagaggatccgttgacactaggtgtcaaactttagtttgacatcaaatctcaaccgtctattatgtctaatctaatggtctgtgat 4870018  T
Q  320 tatttattaaattaacttgtgtgatctttttcccatgtctcacctgatcccacgtcggctgttctgttccatctccttcaact 402  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  4870019 tatttattaaattaacttgtgtgatctttttcccatgtctcacctgatcccacgccggctgttctgctccatctccttcaact 4870101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 20 - 402
Target Start/End: Original strand, 4844024 - 4844406
Alignment:
Q  20 ggtagagggatggataggtgtggaaggagtaggggttgaaattgtccttcgagtggtagtatttttggggatgatttggccctgatggtgaatcaaggag 119  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  4844024 ggtagagggatggataggtgtggaaggagttggggttgaaattgtccttcgagtggtagtatttttggggatgattcggccctgatggtgaatgaaggag 4844123  T
Q  120 aagaggaacgatggcgctgtattaggtttacgagagaaggatgagtaccaacaacttactgataccatgtaagaattataataagataattattagtcgt 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4844124 aagaggaacgatggcgctgtattaggtttacgagagaaggatgagtaccaataacttactgataccatgtaagaattataataagataattattagtcgt 4844223  T
Q  220 gtgtcatttgcattgagaggatccgttgacactaggtgtcaaactttagtttgacatcaaatctcaaccgtctattatgtctaatctaatggtctgtgat 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4844224 gtgtcatttgcattgagaggatccgttgacactaggtgtcaaactttagtttgacatcaaatctcaaccgtctattatgtctaatctaatggtctgtgat 4844323  T
Q  320 tatttattaaattaacttgtgtgatctttttcccatgtctcacctgatcccacgtcggctgttctgttccatctccttcaact 402  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  4844324 tatttattaaattaacttgtgtgatctttttcccatgtctcacctgatcccacgccggctgttctgctccatctccttcaact 4844406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 295
Target Start/End: Complemental strand, 40144383 - 40144330
Alignment:
Q  242 ccgttgacactaggtgtcaaactttagtttgacatcaaatctcaaccgtctatt 295  Q
    |||||||||| || | |||||||||||||||||||||| ||| |||||| ||||    
T  40144383 ccgttgacacgagatatcaaactttagtttgacatcaagtcttaaccgtttatt 40144330  T

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Target: scaffold0176 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 282
Target Start/End: Complemental strand, 27576 - 27531
Alignment:
Q  237 aggatccgttgacactaggtgtcaaactttagtttgacatcaaatc 282  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||    
T  27576 aggatccgttgacaccaggtgtcaaactttagtttgacaccaaatc 27531  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 282
Target Start/End: Complemental strand, 32997097 - 32997052
Alignment:
Q  237 aggatccgttgacactaggtgtcaaactttagtttgacatcaaatc 282  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||    
T  32997097 aggatccgttgacaccaggtgtcaaactttagtttgacaccaaatc 32997052  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 241 - 282
Target Start/End: Complemental strand, 18228699 - 18228658
Alignment:
Q  241 tccgttgacactaggtgtcaaactttagtttgacatcaaatc 282  Q
    ||||||||||| ||||||||||||||||||||||| ||||||    
T  18228699 tccgttgacaccaggtgtcaaactttagtttgacaccaaatc 18228658  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 237 - 282
Target Start/End: Original strand, 6583307 - 6583352
Alignment:
Q  237 aggatccgttgacactaggtgtcaaactttagtttgacatcaaatc 282  Q
    ||||||||||||||  ||||||||||||||||||||||| ||||||    
T  6583307 aggatccgttgacaacaggtgtcaaactttagtttgacaccaaatc 6583352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 350
Target Start/End: Original strand, 38361103 - 38361182
Alignment:
Q  270 ttgacatcaaatctcaaccgtctattatgtctaatctaatggtctgtgattatttattaaattaacttgtgtgatcttttt 350  Q
    |||||| |||||||||||| || ||| ||||||||| |||||||  | ||||||| || ||||||||||||| ||||||||    
T  38361103 ttgacaccaaatctcaaccatcaattttgtctaatccaatggtccataattatttgttcaattaacttgtgt-atcttttt 38361182  T

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Target: scaffold0085 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 350
Target Start/End: Complemental strand, 15875 - 15796
Alignment:
Q  270 ttgacatcaaatctcaaccgtctattatgtctaatctaatggtctgtgattatttattaaattaacttgtgtgatcttttt 350  Q
    |||||| |||||||||||| || ||| ||||||||| |||||||  | ||||||| || ||||||||||||| ||||||||    
T  15875 ttgacaccaaatctcaaccatcaattttgtctaatccaatggtccataattatttgttcaattaacttgtgt-atcttttt 15796  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 237 - 275
Target Start/End: Complemental strand, 28360544 - 28360506
Alignment:
Q  237 aggatccgttgacactaggtgtcaaactttagtttgaca 275  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  28360544 aggatccgttgacaccaggtgtcaaagtttagtttgaca 28360506  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 282
Target Start/End: Complemental strand, 24720178 - 24720133
Alignment:
Q  237 aggatccgttgacactaggtgtcaaactttagtttgacatcaaatc 282  Q
    ||||||| |||||||||||||||||||||||  |||||| ||||||    
T  24720178 aggatccattgacactaggtgtcaaactttatattgacaccaaatc 24720133  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 285
Target Start/End: Complemental strand, 42317667 - 42317638
Alignment:
Q  256 tgtcaaactttagtttgacatcaaatctca 285  Q
    ||||||||||||||||||||||||||||||    
T  42317667 tgtcaaactttagtttgacatcaaatctca 42317638  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 285
Target Start/End: Original strand, 42317005 - 42317053
Alignment:
Q  237 aggatccgttgacactaggtgtcaaactttagtttgacatcaaatctca 285  Q
    ||||||||||||||| |||| | |||||||||||||| | |||||||||    
T  42317005 aggatccgttgacaccaggtatgaaactttagtttgataccaaatctca 42317053  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 15942107 - 15942160
Alignment:
Q  238 ggatccgttgacactaggtgtcaaactttagtttgacatcaaatctcaaccgtc 291  Q
    |||||||||||||| |||| |||||||||| ||||| | | |||||||||||||    
T  15942107 ggatccgttgacaccaggtttcaaactttaatttgataccgaatctcaaccgtc 15942160  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 350
Target Start/End: Original strand, 16902916 - 16902995
Alignment:
Q  270 ttgacatcaaatctcaaccgtctattatgtctaatctaatggtctgtgattatttattaaattaacttgtgtgatcttttt 350  Q
    |||||| |||||||||||| || ||| ||||||||| |||||||  | ||||||  || ||||||||||||| ||||||||    
T  16902916 ttgacaccaaatctcaaccatcaattttgtctaatccaatggtccataattattggttcaattaacttgtgt-atcttttt 16902995  T

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