View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2822_low_5 (Length: 391)
Name: NF2822_low_5
Description: NF2822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2822_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 364; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Complemental strand, 36011653 - 36011281
Alignment:
| Q |
1 |
cgatttttaaaatattgacaaattaatgtgtgatcataataggaatttcatatttggaatagcaacttttgcggcttcggatggccaccaatgaagaatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36011653 |
cgatttttaaaatattgacaaattaatgtgtgatcataataggaatttcatatttggaatagcaacttttgcggcttcggatggccaccaatgaagaatg |
36011554 |
T |
|
| Q |
101 |
aaacatatgaatttggagaaaccaagttatttgtacttttccactttttgtcatcaaagcgagtcaaaatatcttcaaagcaaaagaaaaatttcaacat |
200 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36011553 |
aaacatatgaatttggagaaa--aagttatttgtacttttccactttttgtcatcaaagcgagtcaaaatatcttcaaagcaaaagaaaaatttcaacat |
36011456 |
T |
|
| Q |
201 |
aaaggattgttctcagacaaaggaattaaaccatacatacatatatgaaaggacacatgatgcaagcaaattcaatgaaagtattgttccataggatatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36011455 |
aaaggattgttctcagacaaaggaattaaaccatacatacatatatgaaaggacacatgatgcaagcaaattcaatgaaagtattgttccataggatatt |
36011356 |
T |
|
| Q |
301 |
ccaaaccaagcaagccataaataacgttttaagttgttatttcctcagtgtgtcttccaagttgcagttgaatta |
375 |
Q |
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| T |
36011355 |
ccaaaccaagcaagccataaataacgttttaagttgttatttcctcagtgtgtcttccaagttgcagttgaatta |
36011281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 39 - 375
Target Start/End: Complemental strand, 36008893 - 36008571
Alignment:
| Q |
39 |
ataggaatttcatatttggaatagcaacttttgcggcttcggatggccaccaatgaagaatgaaacatatgaatttggagaaaccaagttatt-tgtact |
137 |
Q |
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|||||||| ||||||||| || |||||||||||||||||||||||||||||||||| || ||||| ||||||| |||||| || ||||| |||||| |
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| T |
36008893 |
ataggaatatcatatttg-aagggcaacttttgcggcttcggatggccaccaatgaa---tgcaacat--gaatttgtagaaactaacttattctgtact |
36008800 |
T |
|
| Q |
138 |
tttccactttttgtcatcaaagcgagtcaaaatatcttcaaagcaaaagaaaaatttcaacataaaggattgttctcagacaaaggaattaaaccataca |
237 |
Q |
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||||||| ||||||||| ||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
36008799 |
tttccacgttttgtcattaaagcttgttaaaatatcttcaacgcaaaagaaaaatttcaacataaaggattgttctcagacaaaggaattaaaccatgca |
36008700 |
T |
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| Q |
238 |
tacatatatgaaaggacacatgatgcaagcaaattcaatgaaagtattgttccataggatattccaaaccaagcaagccataaataacgttttaagttgt |
337 |
Q |
| |
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| |||| ||||||||| ||||| |||| |||||||| ||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
36008699 |
t--atatgaaaaaggacac---atgcatgcaa----aatgaaagcattgttctataggatattctaaagcaagcaagccataaataacgttttaagttgt |
36008609 |
T |
|
| Q |
338 |
tatttcctcagtgtgtcttccaagttgcagttgaatta |
375 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
36008608 |
tatttcctcagtgtgtcttccaagttgcagttgaatta |
36008571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 262 - 375
Target Start/End: Complemental strand, 36020020 - 36019907
Alignment:
| Q |
262 |
gcaagcaaattcaatgaaagtattgttccataggatattccaaaccaagcaagccataaataacgttttaagttgttatttcctcagtgtgtcttccaag |
361 |
Q |
| |
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||||||||||||||| |||| ||||||| ||||||||||| ||| ||||||||||||||||| |||||| |||||||||||||||| ||||||||||||| |
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| T |
36020020 |
gcaagcaaattcaataaaagcattgttctataggatattctaaagcaagcaagccataaatagcgttttcagttgttatttcctcaatgtgtcttccaag |
36019921 |
T |
|
| Q |
362 |
ttgcagttgaatta |
375 |
Q |
| |
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|||||||||||||| |
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| T |
36019920 |
ttgcagttgaatta |
36019907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 287 - 375
Target Start/End: Complemental strand, 36015111 - 36015023
Alignment:
| Q |
287 |
ttccataggatattccaaaccaagcaagccataaataacgttttaagttgttatttcctcagtgtgtcttccaagttgcagttgaatta |
375 |
Q |
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|||||||||||||||||| |||||| | |||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
36015111 |
ttccataggatattccaacccaagctatccataaataacgttttcagttgccatttcctcagtgtgttttccaagttgcagttgaatta |
36015023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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