View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2822_low_6 (Length: 385)
Name: NF2822_low_6
Description: NF2822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2822_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 163; Significance: 6e-87; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 18 - 195
Target Start/End: Complemental strand, 33327239 - 33327061
Alignment:
| Q |
18 |
aataccatcttcctcctcttgtttttaatctcccctaaaatcccttcccactgacaaagtaacctctcaatt-catttctttattatcatcctcattcct |
116 |
Q |
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| T |
33327239 |
aataccatcttcctcctcttgtttttaatctcccctaaaatcccttcccactgacaaagtaacctctcaatttcatttctttattatcatcctcattcct |
33327140 |
T |
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| Q |
117 |
cactttcaacgctctttctttattttctcacaagttccaataattctcaactactaaactaattctcccactaatgtaa |
195 |
Q |
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| T |
33327139 |
cactttcaacgctctttctttatcttctcacaagttccaacaattctcaactactaaactaattctcccactaatgtaa |
33327061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 253 - 374
Target Start/End: Complemental strand, 33327003 - 33326882
Alignment:
| Q |
253 |
cttatctactacctctcagaacacccatcaatcatctcattccgttggagccacagtcactcatggggttcaacatggtctttcctcatcacctccatag |
352 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33327003 |
cttatctactacctctcagaacacccatcaatcatctcattccgttggagccacagtcactcatggggttcaacatggtctttcctcatcacctccatag |
33326904 |
T |
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| Q |
353 |
ccacctacctcatcctctctct |
374 |
Q |
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| T |
33326903 |
ccacctacctcatcctctctct |
33326882 |
T |
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