View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2822_low_7 (Length: 357)

Name: NF2822_low_7
Description: NF2822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2822_low_7
NF2822_low_7
[»] scaffold0256 (1 HSPs)
scaffold0256 (174-340)||(11198-11365)
[»] chr6 (22 HSPs)
chr6 (182-340)||(16580363-16580522)
chr6 (182-340)||(16614858-16615017)
chr6 (182-340)||(16874223-16874382)
chr6 (182-300)||(16572377-16572495)
chr6 (175-340)||(16977493-16977658)
chr6 (23-124)||(6589274-6589375)
chr6 (19-113)||(6416009-6416103)
chr6 (226-284)||(16691581-16691639)
chr6 (18-88)||(6585224-6585294)
chr6 (32-113)||(6432217-6432298)
chr6 (18-88)||(6594593-6594663)
chr6 (18-88)||(7119199-7119269)
chr6 (18-88)||(7131677-7131747)
chr6 (18-88)||(14820735-14820805)
chr6 (32-113)||(6394920-6395001)
chr6 (32-113)||(6423273-6423354)
chr6 (18-81)||(19632481-19632544)
chr6 (18-88)||(6402902-6402972)
chr6 (36-89)||(6410066-6410119)
chr6 (19-88)||(7994169-7994238)
chr6 (47-88)||(8913971-8914012)
chr6 (25-69)||(12102315-12102359)
[»] chr2 (2 HSPs)
chr2 (175-340)||(21629113-21629280)
chr2 (176-336)||(233677-233839)
[»] chr7 (2 HSPs)
chr7 (176-336)||(48298793-48298955)
chr7 (19-124)||(10614636-10614741)
[»] chr3 (4 HSPs)
chr3 (19-124)||(13470683-13470788)
chr3 (24-76)||(51120892-51120944)
chr3 (18-86)||(51113770-51113838)
chr3 (32-88)||(51764427-51764483)
[»] chr1 (2 HSPs)
chr1 (176-336)||(7391656-7391818)
chr1 (18-88)||(19468486-19468556)
[»] chr5 (2 HSPs)
chr5 (18-120)||(41889509-41889611)
chr5 (18-85)||(20478072-20478139)
[»] chr8 (3 HSPs)
chr8 (18-86)||(18315262-18315330)
chr8 (18-69)||(27922550-27922601)
chr8 (32-74)||(17636402-17636444)
[»] chr4 (7 HSPs)
chr4 (32-89)||(21834364-21834421)
chr4 (32-76)||(1524485-1524529)
chr4 (32-88)||(53761759-53761815)
chr4 (24-89)||(1548409-1548475)
chr4 (23-88)||(532236-532301)
chr4 (18-74)||(1519143-1519199)
chr4 (23-91)||(1552751-1552819)


Alignment Details
Target: scaffold0256 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 174 - 340
Target Start/End: Complemental strand, 11365 - 11198
Alignment:
Q  174 gtatctactatgctactggaagttccgaatattgcagccagtgttcatgatgcgaagcataagatcatcagtaacaatttccttcgctttctcgagatca 273  Q
    |||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  11365 gtatctgctatgctactggaagttcccaatattgcagccaatgttcatgatgcgaagcataagatcatcagtaacaatttccttcgcttgctcgagatca 11266  T
Q  274 gtgacaa-aaaacattcaacggtcctcctgaaatgttaaggatcatgtcatggttgtcacaaggcttc 340  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11265 gtgacaaaaaaacattcaacggtcctcctgaaatgttaaggatcatgtcatggttgtcacaaggcttc 11198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 88; Significance: 3e-42; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 182 - 340
Target Start/End: Original strand, 16580363 - 16580522
Alignment:
Q  182 tatgctactggaagttccgaatattgcagccagtgttcatgatgcgaagcataagatcatcagtaacaatttccttcgctttctcgagatcagtgacaaa 281  Q
    ||||||| ||||||||   ||||||||||| | ||||||||| | ||||| ||||||||||||||| ||||||  |||||| ||||||||||||||||||    
T  16580363 tatgctattggaagttttcaatattgcagctaatgttcatgacgtgaagcgtaagatcatcagtaagaatttcagtcgcttgctcgagatcagtgacaaa 16580462  T
Q  282 aaacattcaacggtcctcctg-aaatgttaaggatcatgtcatggttgtcacaaggcttc 340  Q
    ||||||||||| ||||||| | |||||||||||||||||||||||||||||||| |||||    
T  16580463 aaacattcaactgtcctcccgaaaatgttaaggatcatgtcatggttgtcacaatgcttc 16580522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 182 - 340
Target Start/End: Complemental strand, 16615017 - 16614858
Alignment:
Q  182 tatgctactggaagttccgaatattgcagccagtgttcatgatgcgaagcataagatcatcagtaacaatttccttcgctttctcgagatcagtgacaaa 281  Q
    ||||||| ||||||||   ||||||||||| | ||||||||| | ||||| ||||||||||||||| ||||||  |||||| ||||||||||||||||||    
T  16615017 tatgctattggaagttttcaatattgcagctaatgttcatgacgtgaagcgtaagatcatcagtaagaatttcagtcgcttgctcgagatcagtgacaaa 16614918  T
Q  282 aaacattcaacggtcctcctg-aaatgttaaggatcatgtcatggttgtcacaaggcttc 340  Q
    ||||||||||| ||||||| | |||||||||||||||||||||||||||||||| |||||    
T  16614917 aaacattcaactgtcctcccgaaaatgttaaggatcatgtcatggttgtcacaatgcttc 16614858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 182 - 340
Target Start/End: Original strand, 16874223 - 16874382
Alignment:
Q  182 tatgctactggaagttccgaatattgcagccagtgttcatgatgcgaagcataagatcatcagtaacaatttccttcgctttctcgagatcagtgacaaa 281  Q
    ||||||| ||||||||   ||||||||||||| ||||| ||| | ||||| ||||||||||||||| ||||||   | ||| ||||||||||||||||||    
T  16874223 tatgctattggaagttttcaatattgcagccaatgttcctgacgtgaagcgtaagatcatcagtaagaatttcagccacttgctcgagatcagtgacaaa 16874322  T
Q  282 aaacattcaacggtcctcctg-aaatgttaaggatcatgtcatggttgtcacaaggcttc 340  Q
    ||||||||||||||||||| | |||||||| ||||||||||||||||||||||| |||||    
T  16874323 aaacattcaacggtcctcccgaaaatgttatggatcatgtcatggttgtcacaatgcttc 16874382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 182 - 300
Target Start/End: Original strand, 16572377 - 16572495
Alignment:
Q  182 tatgctactggaagttccgaatattgcagccagtgttcatgatgcgaagcataagatcatcagtaacaatttccttcgctttctcgagatcagtgacaaa 281  Q
    ||||||| ||||||||   ||||||||||||| | ||||||| | ||||| ||||||||||||||| ||||||  |||||| ||||||||||||||||||    
T  16572377 tatgctattggaagttttcaatattgcagccaatattcatgacgtgaagcgtaagatcatcagtaagaatttcagtcgcttgctcgagatcagtgacaaa 16572476  T
Q  282 aaacattcaacggtcctcc 300  Q
    |||||||||||||| ||||    
T  16572477 aaacattcaacggttctcc 16572495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 175 - 340
Target Start/End: Complemental strand, 16977658 - 16977493
Alignment:
Q  175 tatctactatgctactggaagttccgaatattgcagccagtgttcatgatgcgaagcataagatcatcagtaacaatttccttcgctttctcgagatcag 274  Q
    ||||| |||||||| || ||||||| | || |||||||| |||||| || ||||||||||||||||||| ||  ||||||| | ||||| ||||||||||    
T  16977658 tatcttctatgctaatgcaagttccca-taatgcagccaatgttcaagacgcgaagcataagatcatcaatacgaatttccattgctttttcgagatcag 16977560  T
Q  275 tgacaaaaaacattcaacggtcctcctg-aaatgttaaggatcatgtcatggttgtcacaaggcttc 340  Q
    ||| ||| || ||||| |||||  || | ||||||||||||||||||||||||||| ||||||||||    
T  16977559 tgataaacaaaattcagcggtctaccagaaaatgttaaggatcatgtcatggttgtaacaaggcttc 16977493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 23 - 124
Target Start/End: Complemental strand, 6589375 - 6589274
Alignment:
Q  23 tttgtatgagacaagttcaacacctccaaattgggaactacaaagttgattccaagtagcttcacttctttacagaaggataagttcaaatatctaatct 122  Q
    |||||||  |||||||||||||||||||   |||||||||||||||| |||||||||||||||||||  |||||||||| |||||||||||  |||||||    
T  6589375 tttgtatttgacaagttcaacacctccagcatgggaactacaaagttcattccaagtagcttcactttcttacagaaggctaagttcaaatgcctaatct 6589276  T
Q  123 ta 124  Q
    ||    
T  6589275 ta 6589274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 113
Target Start/End: Original strand, 6416009 - 6416103
Alignment:
Q  19 aacctttgtatgagacaagttcaacacctccaaattgggaactacaaagttgattccaagtagcttcacttctttacagaaggataagttcaaat 113  Q
    |||||||||||  |||||||||||||||||||  ||||||||||||||||  |||||| |||||||||||| |||||| |||| |||||||||||    
T  6416009 aacctttgtatttgacaagttcaacacctccaggttgggaactacaaagtccattccatgtagcttcacttttttacaaaaggctaagttcaaat 6416103  T

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Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 226 - 284
Target Start/End: Complemental strand, 16691639 - 16691581
Alignment:
Q  226 cgaagcataagatcatcagtaacaatttccttcgctttctcgagatcagtgacaaaaaa 284  Q
    |||||||||||||||||||||| ||||||| |||||| ||||||||| |||||||||||    
T  16691639 cgaagcataagatcatcagtaagaatttccatcgcttgctcgagatcggtgacaaaaaa 16691581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 6585294 - 6585224
Alignment:
Q  18 caacctttgtatgagacaagttcaacacctccaaattgggaactacaaagttgattccaagtagcttcact 88  Q
    ||||||||||||  ||||||||||| |||||||| | || ||||| |||||| ||||||||||||||||||    
T  6585294 caacctttgtatctgacaagttcaatacctccaactgggtaactaaaaagtttattccaagtagcttcact 6585224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 113
Target Start/End: Original strand, 6432217 - 6432298
Alignment:
Q  32 gacaagttcaacacctccaaattgggaactacaaagttgattccaagtagcttcacttctttacagaaggataagttcaaat 113  Q
    |||||||||||||||| ||  ||||||||| ||||||| |||||| |||||||||||| | ||||  ||| |||||||||||    
T  6432217 gacaagttcaacaccttcagcttgggaacttcaaagttcattccatgtagcttcacttttatacaataggctaagttcaaat 6432298  T

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Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 6594663 - 6594593
Alignment:
Q  18 caacctttgtatgagacaagttcaacacctccaaattgggaactacaaagttgattccaagtagcttcact 88  Q
    |||||| |||||  ||||||| |||||||||||  |||||||||| |||||| |||||| |||||||||||    
T  6594663 caacctctgtatttgacaagtacaacacctccagtttgggaactaaaaagtttattccatgtagcttcact 6594593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 7119199 - 7119269
Alignment:
Q  18 caacctttgtatgagacaagttcaacacctccaaattgggaactacaaagttgattccaagtagcttcact 88  Q
    ||||||| ||||  |||||||||||||||||||  | | |||| |||||||| ||||||||||||||||||    
T  7119199 caaccttcgtatctgacaagttcaacacctccagctggtgaacaacaaagttcattccaagtagcttcact 7119269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 7131677 - 7131747
Alignment:
Q  18 caacctttgtatgagacaagttcaacacctccaaattgggaactacaaagttgattccaagtagcttcact 88  Q
    ||||||| ||||  |||||||||||||||||||  | | |||| |||||||| ||||||||||||||||||    
T  7131677 caaccttcgtatctgacaagttcaacacctccagctggcgaacaacaaagttcattccaagtagcttcact 7131747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 14820735 - 14820805
Alignment:
Q  18 caacctttgtatgagacaagttcaacacctccaaattgggaactacaaagttgattccaagtagcttcact 88  Q
    ||||||||||||  || |||||||||||||| || ||||||||| ||||||| |||||| |||| ||||||    
T  14820735 caacctttgtatttgataagttcaacacctctaacttgggaactgcaaagttaattccatgtagtttcact 14820805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 113
Target Start/End: Original strand, 6394920 - 6395001
Alignment:
Q  32 gacaagttcaacacctccaaattgggaactacaaagttgattccaagtagcttcacttctttacagaaggataagttcaaat 113  Q
    |||||||||||||||||||  | ||||||| ||||||| |||||| |||| ||||||| |  |||||| | |||||||||||    
T  6394920 gacaagttcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacttttgaacagaaagctaagttcaaat 6395001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 113
Target Start/End: Original strand, 6423273 - 6423354
Alignment:
Q  32 gacaagttcaacacctccaaattgggaactacaaagttgattccaagtagcttcacttctttacagaaggataagttcaaat 113  Q
    |||||||||||||||||||  |||||||||  |||||| ||| || |||||||||||| || |||  ||| |||||||||||    
T  6423273 gacaagttcaacacctccagcttgggaacttaaaagttcattgcacgtagcttcacttgttcacaataggctaagttcaaat 6423354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 19632481 - 19632544
Alignment:
Q  18 caacctttgtatgagacaagttcaacacctccaaattgggaactacaaagttgattccaagtag 81  Q
    ||||||||||||  ||||||| ||||||||| |  |||||||||| |||||| |||||||||||    
T  19632481 caacctttgtatacgacaagtccaacacctctagcttgggaactagaaagtttattccaagtag 19632544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 6402902 - 6402972
Alignment:
Q  18 caacctttgtatgagacaagttcaacacctccaaattgggaactacaaagttgattccaagtagcttcact 88  Q
    ||||||| ||||  |||||||||||||| || |  | ||||||| ||||||| ||||||||||||||||||    
T  6402902 caaccttcgtatctgacaagttcaacacttctagttggggaactgcaaagtttattccaagtagcttcact 6402972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 89
Target Start/End: Original strand, 6410066 - 6410119
Alignment:
Q  36 agttcaacacctccaaattgggaactacaaagttgattccaagtagcttcactt 89  Q
    |||||||||||| ||  ||||||||| ||||||| |||||| ||||||||||||    
T  6410066 agttcaacaccttcagcttgggaacttcaaagttcattccatgtagcttcactt 6410119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 7994238 - 7994169
Alignment:
Q  19 aacctttgtatgagacaagttcaacacctccaaattgggaactacaaagttgattccaagtagcttcact 88  Q
    |||| ||||||  |||| |||||||||||| |  || |||||||||||||| ||||| ||||||||||||    
T  7994238 aacccttgtatttgacatgttcaacacctctagcttcggaactacaaagttcattcctagtagcttcact 7994169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 88
Target Start/End: Complemental strand, 8914012 - 8913971
Alignment:
Q  47 tccaaattgggaactacaaagttgattccaagtagcttcact 88  Q
    ||||| ||||||||||||||||| ||| ||||||||||||||    
T  8914012 tccaacttgggaactacaaagtttattgcaagtagcttcact 8913971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 12102315 - 12102359
Alignment:
Q  25 tgtatgagacaagttcaacacctccaaattgggaactacaaagtt 69  Q
    |||||| |||||||||||||||||||  ||||||||| |||||||    
T  12102315 tgtatgtgacaagttcaacacctccagtttgggaacttcaaagtt 12102359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 175 - 340
Target Start/End: Original strand, 21629113 - 21629280
Alignment:
Q  175 tatctactatgctactggaagttccgaatattgcagccagtgttcatgatgcgaagcataagatcatcagtaacaatttccttcgctttctcgagatcag 274  Q
    ||||| ||||| || |||||||||| ||||| ||||||| | |||||||  |||||| ||||||||||||||| ||||||| |||||| |||||||| ||    
T  21629113 tatctgctatggtattggaagttcccaatatggcagccaatattcatgacacgaagcgtaagatcatcagtaagaatttccatcgcttgctcgagataag 21629212  T
Q  275 tgacaaaa-aacattcaacggtcctcctg-aaatgttaaggatcatgtcatggttgtcacaaggcttc 340  Q
    |||||||| |||||||||||||||||||| |||||||| ||||||||| |||| ||||||||| ||||    
T  21629213 tgacaaaagaacattcaacggtcctcctgaaaatgttagggatcatgttatggctgtcacaagacttc 21629280  T

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Target: chr2; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 176 - 336
Target Start/End: Complemental strand, 233839 - 233677
Alignment:
Q  176 atctactatgctactggaagttccgaatattgcagccagtgttcatgatgcgaagcataagatcatcagtaacaatttccttcgctttctcgagatcagt 275  Q
    |||| ||||||| ||||||||||| || || ||||||| |||||||||||| |||| ||||||||||||||| |||||||  ||||| || ||| |||||    
T  233839 atctgctatgctgctggaagttccaaacatggcagccaatgttcatgatgctaagcgtaagatcatcagtaagaatttccgccgcttgcttgaggtcagt 233740  T
Q  276 gacaaa-aaacattcaacggtcctcctgaaa-tgttaaggatcatgtcatggttgtcacaagg 336  Q
    || ||| ||||||||| |||||||||||||| ||| | ||||||||| |||| || |||||||    
T  233739 gagaaacaaacattcaccggtcctcctgaaactgtcagggatcatgttatggctgccacaagg 233677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 176 - 336
Target Start/End: Complemental strand, 48298955 - 48298793
Alignment:
Q  176 atctactatgctactggaagttccgaatattgcagccagtgttcatgatgcgaagcataagatcatcagtaacaatttccttcgctttctcgagatcagt 275  Q
    |||| ||||||| ||||||||||| || || ||||||| |||||||||||| |||| ||||||||||||||| |||||||  ||||| || ||| |||||    
T  48298955 atctgctatgctgctggaagttcccaacatggcagccaatgttcatgatgctaagcgtaagatcatcagtaagaatttccgccgcttgcttgaggtcagt 48298856  T
Q  276 gacaaa-aaacattcaacggtcctcctgaaa-tgttaaggatcatgtcatggttgtcacaagg 336  Q
    || ||| ||||||||| |||||||||||||| ||| | ||||||||| |||| || |||||||    
T  48298855 gagaaacaaacattcaccggtcctcctgaaactgtcagggatcatgttatggctgccacaagg 48298793  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 19 - 124
Target Start/End: Original strand, 10614636 - 10614741
Alignment:
Q  19 aacctttgtatgagacaagttcaacacctccaaattgggaactacaaagttgattccaagtagcttcacttctttacagaaggataagttcaaatatcta 118  Q
    |||||| ||||  ||||||||||||||||||| ||||||||| |||| ||| ||||||||||||||||||| ||||||  ||| |||||||||||  |||    
T  10614636 aaccttcgtatttgacaagttcaacacctccagattgggaacaacaacgttcattccaagtagcttcacttttttacaataggctaagttcaaatgccta 10614735  T
Q  119 atctta 124  Q
    ||||||    
T  10614736 atctta 10614741  T

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Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 124
Target Start/End: Complemental strand, 13470788 - 13470683
Alignment:
Q  19 aacctttgtatgagacaagttcaacacctccaaattgggaactacaaagttgattccaagtagcttcacttctttacagaaggataagttcaaatatcta 118  Q
    |||||||||||  ||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||| ||||||  ||| |||||||||||  |||    
T  13470788 aacctttgtatttgacaagttcaacacctccagattgggaacaacaaagttcattccaagtagcttcacttttttacaataggctaagttcaaatgccta 13470689  T
Q  119 atctta 124  Q
    ||||||    
T  13470688 atctta 13470683  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 51120944 - 51120892
Alignment:
Q  24 ttgtatgagacaagttcaacacctccaaattgggaactacaaagttgattcca 76  Q
    ||||||| |||||||||||||||||||| ||| ||||| ||||||| ||||||    
T  51120944 ttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattcca 51120892  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 51113838 - 51113770
Alignment:
Q  18 caacctttgtatgagacaagttcaacacctccaaattgggaactacaaagttgattccaagtagcttca 86  Q
    ||||| ||||||  |||||||  ||||||||||  |||||| || ||||||| ||||||||||||||||    
T  51113838 caaccattgtatttgacaagtctaacacctccagtttgggagcttcaaagttcattccaagtagcttca 51113770  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 88
Target Start/End: Complemental strand, 51764483 - 51764427
Alignment:
Q  32 gacaagttcaacacctccaaattgggaactacaaagttgattccaagtagcttcact 88  Q
    |||||||  ||||||||||  || |||||| ||||||| ||||||||||||||||||    
T  51764483 gacaagtctaacacctccagcttcggaactgcaaagttcattccaagtagcttcact 51764427  T

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Target: chr1 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 176 - 336
Target Start/End: Original strand, 7391656 - 7391818
Alignment:
Q  176 atctactatgctactggaagttccgaatattgcagccagtgttcatgatgcgaagcataagatcatcagtaacaatttccttcgctttctcgagatcagt 275  Q
    |||| ||||||| ||||||||||| || || ||||||| |||||||||||| |||| ||||||||||||||| |||||||  ||||| || ||| ||||     
T  7391656 atctgctatgctgctggaagttcccaacatggcagccaatgttcatgatgcaaagcgtaagatcatcagtaagaatttccgacgcttgcttgaggtcagc 7391755  T
Q  276 gacaaa-aaacattcaacggtcctcctgaaa-tgttaaggatcatgtcatggttgtcacaagg 336  Q
    || ||| ||||||||| |||||||||||||| ||| | ||||||||| |||| || |||||||    
T  7391756 gagaaacaaacattcaccggtcctcctgaaactgtcagggatcatgttatggctgccacaagg 7391818  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 19468556 - 19468486
Alignment:
Q  18 caacctttgtatgagacaagttcaacacctccaaattgggaactacaaagttgattccaagtagcttcact 88  Q
    ||||||||||||  ||||| |||||||||||||  ||||||||||||||||| | ||||||||| ||||||    
T  19468556 caacctttgtatctgacaacttcaacacctccagcttgggaactacaaagttcactccaagtagattcact 19468486  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 41889611 - 41889509
Alignment:
Q  18 caacctttgtatgagacaagttcaacacctccaaattgggaactacaaagttgattccaagtagcttcacttctttacagaaggataagttcaaatatct 117  Q
    |||| |||||||  || ||||||||||||||||| |||||||||  |||||| ||| ||||||||||||||  |  |||   ||||||||||||||||||    
T  41889611 caacttttgtatatgataagttcaacacctccaatttgggaactttaaagttcatttcaagtagcttcactattgaacatccggataagttcaaatatct 41889512  T
Q  118 aat 120  Q
    |||    
T  41889511 aat 41889509  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 20478139 - 20478072
Alignment:
Q  18 caacctttgtatgagacaagttcaacacctccaaattgggaactacaaagttgattccaagtagcttc 85  Q
    |||| |||||||  |||||||||||||||||||  | ||||| ||||| ||| |||||||||||||||    
T  20478139 caacatttgtatatgacaagttcaacacctccagctggggaattacaacgtttattccaagtagcttc 20478072  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 18315330 - 18315262
Alignment:
Q  18 caacctttgtatgagacaagttcaacacctccaaattgggaactacaaagttgattccaagtagcttca 86  Q
    |||| |||||||| |||||||||||||||||||  |||||||||  |||||| |||||| |||||||||    
T  18315330 caacttttgtatgtgacaagttcaacacctccagtttgggaactttaaagttcattccacgtagcttca 18315262  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 27922550 - 27922601
Alignment:
Q  18 caacctttgtatgagacaagttcaacacctccaaattgggaactacaaagtt 69  Q
    |||| |||||||  |||||||||||||||||||| ||||||||| |||||||    
T  27922550 caacatttgtatatgacaagttcaacacctccaatttgggaacttcaaagtt 27922601  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 74
Target Start/End: Complemental strand, 17636444 - 17636402
Alignment:
Q  32 gacaagttcaacacctccaaattgggaactacaaagttgattc 74  Q
    |||||||||||||||||||| ||||||||| ||||||| ||||    
T  17636444 gacaagttcaacacctccaatttgggaacttcaaagttcattc 17636402  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 89
Target Start/End: Complemental strand, 21834421 - 21834364
Alignment:
Q  32 gacaagttcaacacctccaaattgggaactacaaagttgattccaagtagcttcactt 89  Q
    ||||||| |||||||||||  |||||||||||||||||||| | | ||||||||||||    
T  21834421 gacaagtccaacacctccagcttgggaactacaaagttgatactatgtagcttcactt 21834364  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 76
Target Start/End: Complemental strand, 1524529 - 1524485
Alignment:
Q  32 gacaagttcaacacctccaaattgggaactacaaagttgattcca 76  Q
    ||||| |||||||||||||||||||||||| ||||||| ||||||    
T  1524529 gacaaattcaacacctccaaattgggaacttcaaagttcattcca 1524485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 88
Target Start/End: Complemental strand, 53761815 - 53761759
Alignment:
Q  32 gacaagttcaacacctccaaattgggaactacaaagttgattccaagtagcttcact 88  Q
    |||||||||||| |||| |  ||||||||||||||||| ||||||| ||||||||||    
T  53761815 gacaagttcaacgcctctagcttgggaactacaaagttcattccaattagcttcact 53761759  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 1548475 - 1548409
Alignment:
Q  24 ttgtatgagacaagttcaacacctccaaattgggaactacaaagttgattcc-aagtagcttcactt 89  Q
    ||||||| |||||||||||||||||||  ||||||| | ||||||| | ||| ||||||||||||||    
T  1548475 ttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaaagtagcttcactt 1548409  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 532236 - 532301
Alignment:
Q  23 tttgtatgagacaagttcaacacctccaaattgggaactacaaagttgattccaagtagcttcact 88  Q
    |||||||  ||||||||||||||||| |  ||||| ||| ||||||| ||||||||||| ||||||    
T  532236 tttgtatatgacaagttcaacacctctagcttggggacttcaaagttcattccaagtagattcact 532301  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 1519199 - 1519143
Alignment:
Q  18 caacctttgtatgagacaagttcaacacctccaaattgggaactacaaagttgattc 74  Q
    ||||| ||||||| ||||||||||||||||| |  ||||||||| ||||||| ||||    
T  1519199 caacccttgtatgtgacaagttcaacacctctagtttgggaacttcaaagttcattc 1519143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 1552819 - 1552751
Alignment:
Q  23 tttgtatgagacaagttcaacacctccaaattgggaactacaaagttgattccaagtagcttcacttct 91  Q
    |||||||| ||||| |||||||| ||||  ||||||| | ||||||| | ||||||||||||| |||||    
T  1552819 tttgtatgtgacaaattcaacacttccagtttgggaatttcaaagttcagtccaagtagcttcccttct 1552751  T

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