View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2823_high_5 (Length: 279)
Name: NF2823_high_5
Description: NF2823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2823_high_5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 6 - 279
Target Start/End: Original strand, 45378136 - 45378410
Alignment:
| Q |
6 |
agggtacaataatgttacaaccggcctgcnnnnnnnnn-ttacacacaaacaattaattatacatactgaaaaatgaattagtacatagtaagtgaatat |
104 |
Q |
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| T |
45378136 |
agggtacaataatgttacaaccggcctgcaaaaaaaaaattacacacaaacaattaataatacatactgaaaaatgaattagtacatagtaagtgaatat |
45378235 |
T |
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| Q |
105 |
tgaacataaaagaggttgttcaaaagtgcatatacccagcaagggaatgaagctgggtgatcaaagtccacaatttagtcatatgtgtgtgtgactatat |
204 |
Q |
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| T |
45378236 |
tgaacataaaagaggttgttcaaaagtgcatatacccagcaagggaatgaagctgggtgatcaaagtccacaacttagtcatatgtgtgtgtgactatat |
45378335 |
T |
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| Q |
205 |
ctcccaaataatctgatttgattgattatagcaagaagcagagacgatttgttttaagatgaagataactgagaa |
279 |
Q |
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| T |
45378336 |
ctcccaaataatctgatttgattgattatagcaagaagcagagacgatttgatttaagatgaagataactgagaa |
45378410 |
T |
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